View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_187 (Length: 231)
Name: NF6871A_low_187
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_187 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 25700613 - 25700802
Alignment:
| Q |
1 |
atgaataagaaggcacctctatctggaaaagtaatacatgtcacccacagttggagaatgagtctattctagacctggttgtatcatattccttcctcaa |
100 |
Q |
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| T |
25700613 |
atgaataagaaggcacctctatctgggaaagtaatacatgtcacccacagttggagaatgagtctattctagacctggttgtatcatattccttcctcaa |
25700712 |
T |
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| Q |
101 |
ctcttctctcacacaaatgtgtcaatcnnnnnnncggtcctcttgcgattgtcatctgccactgcttctttagactacctagtcgtcgcc |
190 |
Q |
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| T |
25700713 |
ctcttctctcacacaaatgcgtcaatctttttttcggtcctcctgcgactgtcatctgccaccgcttctttagactacctagtggtcgcc |
25700802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 25700822 - 25700880
Alignment:
| Q |
173 |
gactacctagtcgtcgccactctacaccacttcttccaattacatcccttgttttatcg |
231 |
Q |
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| T |
25700822 |
gactacctagtcgtcgccgctctacaccacttcttccaattacatcccttgttttatcg |
25700880 |
T |
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