View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_188 (Length: 230)
Name: NF6871A_low_188
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_188 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 44806607 - 44806727
Alignment:
| Q |
112 |
taaattctaagggagtgtttgtttcatagattctaaatatattcctggaaattcagggttggaaattaaaa--ctcgtgtttcttacaatcgaaccaata |
209 |
Q |
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| T |
44806607 |
taaattctaagggagtgtttgtttcatagattctaaatatattcctggaaattcagggttggaaattaaaactctcgtgcttcttacaatggaaccaata |
44806706 |
T |
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| Q |
210 |
atagttcccaggaaataatga |
230 |
Q |
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| T |
44806707 |
atagttcccaggaaataatga |
44806727 |
T |
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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 43056695 - 43056804
Alignment:
| Q |
6 |
gtctttacacgctcaaaagtatat-aatggagttctccatttcttttgcgaaatgaagacgatctctacttaaaaggaatgatgcatctaactctctaag |
104 |
Q |
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| T |
43056695 |
gtctttacacactcaaaagtatattaatgcagttctcaatttcttttacgaaatgaagacaatctctacttgaaaggaatgaggaatctaactcttaaag |
43056794 |
T |
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| Q |
105 |
cattatctaa |
114 |
Q |
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| T |
43056795 |
cattatctaa |
43056804 |
T |
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