View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_19 (Length: 413)

Name: NF6871A_low_19
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_19
NF6871A_low_19
[»] chr6 (3 HSPs)
chr6 (24-413)||(663606-664000)
chr6 (185-413)||(908100-908328)
chr6 (187-231)||(10157995-10158039)
[»] chr2 (1 HSPs)
chr2 (186-237)||(44605137-44605188)
[»] chr7 (4 HSPs)
chr7 (60-126)||(38134414-38134480)
chr7 (80-143)||(44172881-44172944)
chr7 (76-150)||(36314611-36314685)
chr7 (186-234)||(36314628-36314676)
[»] chr5 (1 HSPs)
chr5 (64-124)||(16315862-16315922)
[»] chr8 (1 HSPs)
chr8 (61-126)||(6501481-6501546)
[»] chr4 (1 HSPs)
chr4 (67-116)||(5654609-5654658)
[»] chr3 (1 HSPs)
chr3 (75-116)||(8039206-8039247)
[»] chr1 (2 HSPs)
chr1 (189-237)||(40158408-40158456)
chr1 (66-126)||(43328458-43328518)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 24 - 413
Target Start/End: Complemental strand, 664000 - 663606
Alignment:
Q  24 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664000 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 663901  T
Q  124 tgtta-----gcgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 218  Q
    |||||     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663900 tgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 663801  T
Q  219 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattttatatacgaacagttttta 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  663800 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattatatatatgaacaattttta 663701  T
Q  319 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttga 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663700 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttga 663606  T

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Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 185 - 413
Target Start/End: Original strand, 908100 - 908328
Alignment:
Q  185 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttg 284  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||||||||||||||||||||||| |||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg 908199  T
Q  285 gtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaa 384  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  908200 gtgctacaaagattatatatatcaacaaattttatggtttatgatttacttatgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaa 908299  T
Q  385 tggagttcgcataataatgcagtttttga 413  Q
    ||||||| |||||||||||||||||||||    
T  908300 tggagtttgcataataatgcagtttttga 908328  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  187 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 231  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  186 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 237  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
Q  60 ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 126  Q
    |||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134480 ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  80 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagcgttgtgttagtgt 143  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| | |||||||| ||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
Q  76 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagcgttgtgttagtgttagacac 150  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| | ||||| || ||||| |||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac 36314611  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  186 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 234  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 16315862 - 16315922
Alignment:
Q  64 attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgt 124  Q
    |||||||||||||||||||| |||||||||| | |||  ||| || |||||||||||||||    
T  16315862 attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgt 16315922  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
Q  61 gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 126  Q
    |||||||||| |||||||||| | |||||||||||  |||  ||| || |||||||||||||||||    
T  6501481 gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
Q  67 gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa 116  Q
    ||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 8039206 - 8039247
Alignment:
Q  75 gacactgatgataatttgagaacatggcatatttcaatgtaa 116  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaa 8039247  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  189 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 237  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 43328458 - 43328518
Alignment:
Q  66 tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 126  Q
    ||||| ||||||||| || |||||||||||| |||  ||| || |||||||||||||||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgt 43328518  T

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