View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_193 (Length: 230)
Name: NF6871A_low_193
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_193 |
 | |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34496549 - 34496778
Alignment:
| Q |
1 |
tcaataaaccagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcga |
100 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34496549 |
tcaataaatcagaggaggtgttggatgaccaacacctcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcga |
34496648 |
T |
|
| Q |
101 |
gccttgttaaggctcaaccgtattcaaaatcctcaagtatctttcttaatggaaactaggttaaagtctgatgagatggagtgtgttagaataaaggctg |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
34496649 |
gccatgttaaggctcaaccgtattcaaaatcctcaagtagttttcttaatggaaactaggttaaagtctgatgagatggagtgttttagaataaaggctg |
34496748 |
T |
|
| Q |
201 |
gtttctcctctggtctgtttgttccttgtg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34496749 |
gtttctcctctggtctgtttgttccttgtg |
34496778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 15701541 - 15701649
Alignment:
| Q |
8 |
accagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | ||||||| || |||||||||| ||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
15701541 |
accagagggggtgttggatgaccaacacctcctatcccaatgaaaatcctaagttggaactgcagagggttggggaaccctcgggcagttcgagccttgt |
15701640 |
T |
|
| Q |
108 |
taaggctca |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
15701641 |
taaggctca |
15701649 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 21439727 - 21439622
Alignment:
| Q |
11 |
agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa |
110 |
Q |
| |
|
||||| |||||||||||||||||| | |||| ||||||| | | |||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
21439727 |
agaggtggtgttggatgaccaacaccgcctaatccaatgaaaatactcagttggaactgcagggggctggggaaccctcgggcagttcgagccttgttaa |
21439628 |
T |
|
| Q |
111 |
ggctca |
116 |
Q |
| |
|
|||||| |
|
|
| T |
21439627 |
ggctca |
21439622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8371130 - 8370901
Alignment:
| Q |
1 |
tcaataaaccagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8371130 |
tcaataaaccagagggggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgtagggggttggggaaccctcgggcaattcga |
8371031 |
T |
|
| Q |
101 |
gccttgttaaggctcaaccgtattcaaaatcctcaagtatctttcttaatggaaactaggttaaagtctgatgagatggagtgtgttagaataaaggctg |
200 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||| | || ||||| || || |
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|
| T |
8371030 |
gccttgttaaggctcatccgtatccaaaatcctcaagtagttttcttaatggaaactagattaaagtctgatgaaatggagagagtcagaatcaattgtg |
8370931 |
T |
|
| Q |
201 |
gtttctcctctggtctgtttgttccttgtg |
230 |
Q |
| |
|
| ||||| |||||| ||||||||||||||| |
|
|
| T |
8370930 |
gattctcttctggtttgtttgttccttgtg |
8370901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 40046881 - 40046989
Alignment:
| Q |
8 |
accagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaa-ccctcgggcaattcgagccttg |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||| |||| |||||||| ||||||||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
40046881 |
accagagggggtgttggatgaccaacacctccttccccaatgaaaatcttgagttggaactgcagggggttggggaatccctc-ggcagttcaagccttg |
40046979 |
T |
|
| Q |
107 |
ttaaggctca |
116 |
Q |
| |
|
|| ||||||| |
|
|
| T |
40046980 |
ttgaggctca |
40046989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 20394500 - 20394397
Alignment:
| Q |
13 |
agggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaagg |
112 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||| || |||||||||| || ||||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
20394500 |
agggggtgttggatgaccaacaccgcctagaccaatgaaaatcataagttggaactgtcgggggttggggaaccctcgagcagttcgagccttgtcaagg |
20394401 |
T |
|
| Q |
113 |
ctca |
116 |
Q |
| |
|
|||| |
|
|
| T |
20394400 |
ctca |
20394397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 28047490 - 28047599
Alignment:
| Q |
8 |
accagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgt |
107 |
Q |
| |
|
|||||||||||||||||||||| |||| | | || ||||||| |||| |||||||| || |||||||||| |||||||| ||| |||| ||||||| |
|
|
| T |
28047490 |
accagagggggtgttggatgacaaacaccagccttcataatgaaaatcttgagttggaactgtcgggggttgggaaaccctcgagcagttcgggccttgt |
28047589 |
T |
|
| Q |
108 |
taaggctcaa |
117 |
Q |
| |
|
|||||||||| |
|
|
| T |
28047590 |
taaggctcaa |
28047599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 204615 - 204386
Alignment:
| Q |
1 |
tcaataaaccagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcga |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
204615 |
tcaataaactagagggggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgcagggggttggggaaccctcaggcaatttga |
204516 |
T |
|
| Q |
101 |
gccttgttaaggctcaaccgtattcaaaatcctcaagtatctttcttaatggaaactaggttaaagtctgatgagatggagtgtgttagaataaaggctg |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||||| |||||| | || ||||| || || |
|
|
| T |
204515 |
gccttgttaaggcttaaccgtatccaaaatcctcaagtagttttcttaatggaaactagattaaattctgatgaaatggagagagtcagaatcaattgtg |
204416 |
T |
|
| Q |
201 |
gtttctcctctggtctgtttgttccttgtg |
230 |
Q |
| |
|
| ||||| |||||| ||||||||||||||| |
|
|
| T |
204415 |
gattctcttctggtttgtttgttccttgtg |
204386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 210692 - 210463
Alignment:
| Q |
1 |
tcaataaaccagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcga |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
210692 |
tcaataaactagagggggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgcagggggttggggaaccctcaggcaatttga |
210593 |
T |
|
| Q |
101 |
gccttgttaaggctcaaccgtattcaaaatcctcaagtatctttcttaatggaaactaggttaaagtctgatgagatggagtgtgttagaataaaggctg |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||||| |||||| | || ||||| || || |
|
|
| T |
210592 |
gccttgttaaggcttaaccgtatccaaaatcctcaagtagttttcttaatggaaactagattaaattctgatgaaatggagagagtcagaatcaattgtg |
210493 |
T |
|
| Q |
201 |
gtttctcctctggtctgtttgttccttgtg |
230 |
Q |
| |
|
| ||||| |||||| ||||||||||||||| |
|
|
| T |
210492 |
gattctcttctggtttgtttgttccttgtg |
210463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 32802349 - 32802422
Alignment:
| Q |
59 |
agttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaaggctcaaccgtattcaaaatcc |
132 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
32802349 |
agttggaactgcaggggtttggggaaccctctggcagttcgagccttgttaaggctcacccgtattgaaaatcc |
32802422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 14447601 - 14447493
Alignment:
| Q |
8 |
accagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | ||||||||| |||||||||| || |||| ||||||| ||||||||| |||||||||| |
|
|
| T |
14447601 |
accagagggggtgttggatgaccaacacctcctatcccaatgaaacttataagttggaactgtcggggattggggagtcctcgggcagttcgagcctttg |
14447502 |
T |
|
| Q |
108 |
taaggctca |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
14447501 |
taaggctca |
14447493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 37737686 - 37737782
Alignment:
| Q |
12 |
gagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgtt |
108 |
Q |
| |
|
|||||||||||||||| | |||| |||||| | ||||||| | ||||||||||||| |||| ||| || ||| |||| |||||| | |||||||| |
|
|
| T |
37737686 |
gagggggtgttggatgcctaacacctcctaaaacaatgaaaattctaagttggaattgtagggagtttggaaactctcgagcaattagggccttgtt |
37737782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 31696361 - 31696460
Alignment:
| Q |
17 |
ggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaaggctca |
116 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| | |||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
31696361 |
ggtgttggatgaccaacactgcctagcccaatgaaaatactaagctggaactgcagggggttggggaaccctcgggcagttcgagccttgtcaaggctca |
31696460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 29941672 - 29941808
Alignment:
| Q |
17 |
ggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaaggctca |
116 |
Q |
| |
|
|||||||||||||||||| | || | | |||||| || |||||||||| || ||||||| |||| || | |||| ||||||||||||||||||||| |
|
|
| T |
29941672 |
ggtgttggatgaccaacaccgccaagaaccatgaaaatcctaagttggaactgtcgggggttagggagtccccaggcagttcgagccttgttaaggctca |
29941771 |
T |
|
| Q |
117 |
accgtattcaaaatcctcaagtatctttcttaatgga |
153 |
Q |
| |
|
||||||| |||| || ||| || ||||||||||| |
|
|
| T |
29941772 |
cccgtattgaaaacccccaaatagtcttcttaatgga |
29941808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 30319189 - 30319244
Alignment:
| Q |
8 |
accagagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttg |
63 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||| ||||||| |||||||||| |
|
|
| T |
30319189 |
accagagggggtgttagatgaccaacacctcccacccgaatgaaaatcttaagttg |
30319244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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