View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_196 (Length: 229)

Name: NF6871A_low_196
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_196
NF6871A_low_196
[»] chr6 (6 HSPs)
chr6 (1-229)||(1414272-1414500)
chr6 (2-229)||(1419822-1420046)
chr6 (95-229)||(1410990-1411124)
chr6 (96-229)||(1408109-1408242)
chr6 (13-94)||(1410884-1410965)
chr6 (15-85)||(1408010-1408080)
[»] chr8 (2 HSPs)
chr8 (96-221)||(3600507-3600632)
chr8 (96-221)||(14339374-14339499)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1414272 - 1414500
Alignment:
Q  1 tatgaattagcctcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1414272 tatgaattagcctcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatg 1414371  T
Q  101 tgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1414372 tgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttc 1414471  T
Q  201 tttggaaacatatcaggaagagcttctga 229  Q
    |||||||||||||||||||||||||||||    
T  1414472 tttggaaacatatcaggaagagcttctga 1414500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 1419822 - 1420046
Alignment:
Q  2 atgaattagcctcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgt 101  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||    
T  1419822 atgaattagcctcatgaattctatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagtcatgaatgt 1419921  T
Q  102 gtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttct 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |    | ||  ||||||||||||||| |||||   ||    
T  1419922 gtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag---ct 1420018  T
Q  202 ttggaaacatatcaggaagagcttctga 229  Q
    |||||||||||||||| |||||||||||    
T  1420019 ttggaaacatatcagggagagcttctga 1420046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 1410990 - 1411124
Alignment:
Q  95 caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata 194  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||| |||| |||||||| ||||||| ||||||    
T  1410990 caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaata 1411089  T
Q  195 agcttctttggaaacatatcaggaagagcttctga 229  Q
    |||||||||||||||||||||||||||||||||||    
T  1411090 agcttctttggaaacatatcaggaagagcttctga 1411124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 1408109 - 1408242
Alignment:
Q  96 aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa 195  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |   | |||||| ||| |||  ||||   ||||||||||| ||||    
T  1408109 aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa 1408208  T
Q  196 gcttctttggaaacatatcaggaagagcttctga 229  Q
    ||| |||||||| ||   ||||||||||||||||    
T  1408209 gctactttggaagcaccacaggaagagcttctga 1408242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 1410884 - 1410965
Alignment:
Q  13 tcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga 94  Q
    |||||||||  |||||| |||||||| |||||||||||||||| || |||||| |||||| |||||||||||| ||||||||    
T  1410884 tcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga 1410965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 1408010 - 1408080
Alignment:
Q  15 atgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagt 85  Q
    |||||||  ||||| ||||||||||||||||||| |||||| |||| |||||||| || ||| ||||||||    
T  1408010 atgaattctatgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagt 1408080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
Q  96 aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa 195  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| ||  ||||||||||    ||  |||| | | ||||||||| ||||    
T  3600507 aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa 3600606  T
Q  196 gcttctttggaaacatatcaggaaga 221  Q
    |||||||||||| ||| |||||||||    
T  3600607 gcttctttggaagcatctcaggaaga 3600632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
Q  96 aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa 195  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| ||  ||||||||||    ||  |||| |   ||||||||| ||||    
T  14339374 aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa 14339473  T
Q  196 gcttctttggaaacatatcaggaaga 221  Q
    |||||||||||| ||| |||||||||    
T  14339474 gcttctttggaagcatctcaggaaga 14339499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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