View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_197 (Length: 229)

Name: NF6871A_low_197
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_197
NF6871A_low_197
[»] chr1 (11 HSPs)
chr1 (1-223)||(25700965-25701190)
chr1 (10-141)||(12318366-12318497)
chr1 (28-144)||(9109279-9109396)
chr1 (101-153)||(16216427-16216478)
chr1 (40-144)||(25652276-25652380)
chr1 (70-171)||(38746617-38746716)
chr1 (101-141)||(13547023-13547064)
chr1 (101-141)||(13548934-13548975)
chr1 (87-144)||(41136010-41136066)
chr1 (57-141)||(10157818-10157901)
chr1 (101-144)||(29136438-29136482)
[»] chr3 (7 HSPs)
chr3 (16-144)||(5270563-5270692)
chr3 (1-144)||(50432475-50432619)
chr3 (1-144)||(1683664-1683808)
chr3 (1-144)||(20937848-20937991)
chr3 (5-144)||(49031985-49032123)
chr3 (66-144)||(49199364-49199442)
chr3 (48-125)||(35138583-35138659)
[»] chr5 (6 HSPs)
chr5 (47-144)||(8038390-8038486)
chr5 (9-142)||(316956-317092)
chr5 (1-141)||(33905858-33905998)
chr5 (1-141)||(10054649-10054789)
chr5 (69-138)||(4160796-4160864)
chr5 (19-144)||(10700501-10700626)
[»] chr4 (13 HSPs)
chr4 (1-125)||(41961609-41961732)
chr4 (2-143)||(33990037-33990177)
chr4 (66-141)||(6199766-6199842)
chr4 (66-144)||(3786153-3786231)
chr4 (28-130)||(6719761-6719862)
chr4 (48-141)||(12073586-12073678)
chr4 (105-143)||(40974970-40975008)
chr4 (66-144)||(12119735-12119813)
chr4 (86-144)||(33090071-33090129)
chr4 (101-141)||(27416899-27416940)
chr4 (69-144)||(32091632-32091706)
chr4 (66-141)||(26699341-26699416)
chr4 (66-141)||(55085341-55085416)
[»] chr8 (8 HSPs)
chr8 (12-144)||(11137217-11137349)
chr8 (48-144)||(3772382-3772477)
chr8 (66-141)||(7624846-7624919)
chr8 (32-140)||(10240318-10240426)
chr8 (101-141)||(40221938-40221979)
chr8 (105-144)||(2999740-2999780)
chr8 (40-143)||(9633488-9633590)
chr8 (66-141)||(11384178-11384253)
[»] chr7 (9 HSPs)
chr7 (20-145)||(43363321-43363447)
chr7 (48-144)||(5116797-5116893)
chr7 (80-153)||(14301374-14301446)
chr7 (66-141)||(8452099-8452173)
chr7 (79-145)||(22552498-22552563)
chr7 (101-144)||(22328323-22328367)
chr7 (47-144)||(8359197-8359293)
chr7 (48-144)||(1360054-1360150)
chr7 (48-144)||(29608927-29609023)
[»] chr2 (8 HSPs)
chr2 (66-156)||(16676408-16676498)
chr2 (13-144)||(28197084-28197213)
chr2 (67-144)||(30217945-30218022)
chr2 (50-141)||(42261368-42261457)
chr2 (99-139)||(36282852-36282892)
chr2 (101-139)||(7451314-7451353)
chr2 (66-143)||(34811121-34811197)
chr2 (101-141)||(45727122-45727161)
[»] scaffold0002 (1 HSPs)
scaffold0002 (50-141)||(490203-490292)
[»] chr6 (1 HSPs)
chr6 (50-108)||(11660831-11660888)
[»] scaffold0197 (1 HSPs)
scaffold0197 (66-141)||(1295-1370)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25700965 - 25701190
Alignment:
Q  1 ttagatgtgtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25700965 ttagatgtgtgggacaaatatcaatgcaaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcac 25701064  T
Q  101 aaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaataaacacagcaaggatttt---tctagttcgacataatttgaccagc 197  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||   || |||||| |||||||||||||||    
T  25701065 aaaccacaaccgaaccaaaaaataacaagataaagagagtagagtatagaaaataaacacagcaaggatttttcatccagttcggcataatttgaccagc 25701164  T
Q  198 ccaaataaaactctactaacactttt 223  Q
    ||||||||||||||| ||||||||||    
T  25701165 ccaaataaaactctagtaacactttt 25701190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 12318366 - 12318497
Alignment:
Q  10 tgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaa 109  Q
    |||| ||| |||||||| ||||||||| | ||||||  |||| |||||||| | ||||||||||  || ||||||||||| | ||||||| ||| || ||    
T  12318366 tggggcaagtatcaatggcaaccaataaccaaaataagcacacgcaacaacaacagatctagatttaacctagcaaccaattgtaaagca-aaatcataa 12318464  T
Q  110 tcgaaccaaagaat-aacaagataaagagagta 141  Q
    | |||||||||||| |||||||||||| |||||    
T  12318465 ttgaaccaaagaataaacaagataaagggagta 12318497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 9109279 - 9109396
Alignment:
Q  28 caaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-- 125  Q
    ||||||||| ||||||||  |||||| || ||| | ||||||||||| || ||||||||||| | | |||||  |||||||||| |||||||||||||      
T  9109279 caaccaataactaaaataaccacaagtaataacaacagatctagatctaagctagcaaccaactgtgaagca-taaccacaatcaaaccaaagaataaac 9109377  T
Q  126 caagataaagagagtagag 144  Q
     ||||||||||||||||||    
T  9109378 aaagataaagagagtagag 9109396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 16216427 - 16216478
Alignment:
Q  101 aaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaa 153  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||||||||    
T  16216427 aaaccacaatcgaactaaagaataacgagataaagag-gtagagtatataaaa 16216478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 25652380 - 25652276
Alignment:
Q  40 aaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagaga 138  Q
    |||||| ||||||| |||||| | | || |||||| ||||||||||| |||| ||||||| ||||||||  | ||||||| ||| ||||| |||||||||    
T  25652380 aaaataatcacaagtaacaacaacaaatttagatctaatctagcaactaagtgtaaagca-aaaccacaggcaaaccaaataataaacaaaataaagaga 25652282  T
Q  139 gtagag 144  Q
    ||||||    
T  25652281 gtagag 25652276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 38746617 - 38746716
Alignment:
Q  70 agatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaataaacacagcaaggat 169  Q
    ||||| || ||||||| ||| | |||||| |||| |||||| ||| ||||||| |||||||||||||||||| |||||||| ||  |||||| |||||||    
T  38746617 agatctaaactagcaatcaactgtaaagc-caaatcacaattgaatcaaagaacaacaagataaagagagtatagtatatagaa-caacacaccaaggat 38746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 13547023 - 13547064
Alignment:
Q  101 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 141  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  13547023 aaaccacaatccaaccaaagaataaacaagataaagagagta 13547064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 13548934 - 13548975
Alignment:
Q  101 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 141  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  13548934 aaaccacaatccaaccaaagaataaacaagataaagagagta 13548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 41136066 - 41136010
Alignment:
Q  87 caagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 144  Q
    ||||| ||||||| ||| |||||  ||| |||||||||||||||||||||||||||||    
T  41136066 caagtgtaaagca-aaatcacaactgaatcaaagaataacaagataaagagagtagag 41136010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 10157901 - 10157818
Alignment:
Q  57 caacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 141  Q
    |||| ||||||||||||| ||| ||| || ||||| ||||| | | | |||||||||| ||||||| |||| |||||||||||||    
T  10157901 caacaatagatctagatcaaatttagaaatcaagtgtaaagta-atatcacaatcgaatcaaagaacaacaggataaagagagta 10157818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 29136482 - 29136438
Alignment:
Q  101 aaaccacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    
T  29136482 aaaccacaatctaaccaaaggataaacaagataaagagagtagag 29136438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 5270692 - 5270563
Alignment:
Q  16 aaatatcaatgccaaccaatatc-taaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaa 114  Q
    ||||||||||| ||||||||| |  |||| |  ||||||||||||| ||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  5270692 aaatatcaatgacaaccaataacaaaaaaaaaccacaagcaacaacaatagatctagatctaatctagcaaccaagtgtaatgca-aaaccacaatcgaa 5270594  T
Q  115 ccaaagaat-aacaagataaagagagtagag 144  Q
    ||||||||| |||| ||||||||||||||||    
T  5270593 ccaaagaataaacatgataaagagagtagag 5270563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 50432475 - 50432619
Alignment:
Q  1 ttagatgtgtgggacaaatatcaatgccaaccaatatctaaaat---agtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaag 97  Q
    ||||||||||||  |||||||||||| ||||||| | | |||     |||||||||||||||  ||||||||||||| ||||||||||| ||||  ||||    
T  50432475 ttagatgtgtggagcaaatatcaatggcaaccaacaaccaaacagtcagtcacaagcaacaataatagatctagatccaatctagcaacgaagtggaaag 50432574  T
Q  98 cacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 144  Q
    || ||||||||||| |||||||| | |||||||||||||||||||||    
T  50432575 ca-aaaccacaatcaaaccaaag-acaacaagataaagagagtagag 50432619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 1683808 - 1683664
Alignment:
Q  1 ttagatgtgtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcac 100  Q
    |||||||||||||||||| ||||||| ||||||||| | || |||   |||| ||||||   |||||||||||| ||||||| |||| ||| ||||  |     
T  1683808 ttagatgtgtgggacaaacatcaatgacaaccaataaccaacataactacaaccaacaatagtagatctagatctaatctagaaacctagtgtaaaata- 1683710  T
Q  101 aaaccacaatcgaaccaaagaa--taacaagataaagagagtagag 144  Q
    ||||||||||||||||||| ||   |||||||||||||||||||||    
T  1683709 aaaccacaatcgaaccaaaaaaataaacaagataaagagagtagag 1683664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 20937991 - 20937848
Alignment:
Q  1 ttagatgtgtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcac 100  Q
    |||||| |||||||||| |||||||| |||| ||||   ||||||   ||||||| |||| | | ||||||||| ||||||  || ||||| ||||| |     
T  20937991 ttagatttgtgggacaagtatcaatgacaactaataagcaaaataactacaagcagcaacaacaaatctagatctaatctattaatcaagtgtaaagta- 20937893  T
Q  101 aaaccacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    ||| ||||||||||||||| ||||| |||||||||||||||||||    
T  20937892 aaatcacaatcgaaccaaataataaacaagataaagagagtagag 20937848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 49031985 - 49032123
Alignment:
Q  5 atgtgtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaac 104  Q
    ||||||||||||||  |||||| ||||||||| | |||||| |||||||||||| | | |||  ||| | ||| ||| ||||||| | |||  || ||||    
T  49031985 atgtgtgggacaaacgtcaatgacaaccaataaccaaaatattcacaagcaacaccaacagacataggttgaacctaacaaccaaatgtaagacaaaaac 49032084  T
Q  105 cacaatcgaaccaaagaataacaagataaagagagtagag 144  Q
    ||| ||| ||| |||||||||||||||||| || ||||||    
T  49032085 cac-atcaaactaaagaataacaagataaatagtgtagag 49032123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 49199364 - 49199442
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| |||| |||||||||||||||||||    
T  49199364 atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataaagagagtagag 49199442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 35138583 - 35138659
Alignment:
Q  48 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa 125  Q
    ||||||||||||| | | || |||||| ||||||||||  | || |||| || |||||||||||||||||||||||||    
T  35138583 cacaagcaacaacaacatatttagatccaatctagcaattaggtgtaaaaca-aaaccacaatcgaaccaaagaataa 35138659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 8038486 - 8038390
Alignment:
Q  47 tcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 144  Q
    |||||| ||||||| |||||||| |||| |||||||||||||||| ||||| | ||||||||||||||||||| ||||| ||||||||||||||||||    
T  8038486 tcacaatcaacaacaatagatcttgatctaatctagcaaccaagtgtaaagaa-aaaccacaatcgaaccaaaaaataataagataaagagagtagag 8038390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 317092 - 316956
Alignment:
Q  9 gtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaac---gatagatctagatcgaatctagcaaccaagtataaagcacaaacc 105  Q
    ||||||||| ||||| || ||||||||| | ||||||  |||||||||||||   || |||||||||||  ||||||||||||||| ||||||| |||||    
T  317092 gtgggacaagtatcagtgacaaccaataaccaaaataaccacaagcaacaacaacgacagatctagatcttatctagcaaccaagtgtaaagca-aaacc 316994  T
Q  106 acaatcgaaccaaagaat-aacaagataaagagagtag 142  Q
    ||||| |||||||||||| ||||| |||||||||||||    
T  316993 acaattgaaccaaagaataaacaaaataaagagagtag 316956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 33905858 - 33905998
Alignment:
Q  1 ttagatgtgtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcac 100  Q
    |||||| ||||  |||| |||||||| ||||||||| ||||||||  | || |||||  | ||||||| ||||  |||||||||| ||||| ||||| |     
T  33905858 ttagatttgtgaaacaagtatcaatgacaaccaataactaaaataaccgcacgcaacgccaatagatcaagatttaatctagcaatcaagtgtaaagta- 33905956  T
Q  101 aaaccacaatcgaaccaaagaataa-caagataaagagagta 141  Q
    |||||||| ||||||||| |||||| ||||||||||||||||    
T  33905957 aaaccacattcgaaccaatgaataaacaagataaagagagta 33905998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 10054649 - 10054789
Alignment:
Q  1 ttagatgtgtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcac 100  Q
    |||||| ||| |||||| |||||||| |||| ||||   ||||||  |||| |||||| | | | ||||||||| |||||||||||||||| |||||||     
T  10054649 ttagatttgtaggacaagtatcaatgacaactaataatcaaaataaccacatgcaacatcaacaaatctagatctaatctagcaaccaagtgtaaagca- 10054747  T
Q  101 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 141  Q
    |||  ||||||||| |||| ||| ||||||||||| ||||||    
T  10054748 aaattacaatcgaagcaaaaaataaacaagataaaaagagta 10054789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 4160864 - 4160796
Alignment:
Q  69 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagaga 138  Q
    |||||| |||||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||||| ||||    
T  4160864 tagatctaatcta-caaccaagtgtaaagca-aaaccataatcgaaccaaagaataaacaagataatgaga 4160796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 10700501 - 10700626
Alignment:
Q  19 tatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaa 118  Q
    |||||||| ||||||||| | ||||||    ||||||| ||| || |||||| ||  |||||| ||| ||||| |||| || ||||||||||| || |||    
T  10700501 tatcaatgacaaccaataaccaaaataactgcaagcaataacaatggatctatatttaatctaacaatcaagtgtaaatca-aaaccacaatcaaatcaa 10700599  T
Q  119 agaataa-caagataaagagagtagag 144  Q
    ||||||| |||||||||||| ||||||    
T  10700600 agaataagcaagataaagagcgtagag 10700626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 41961732 - 41961609
Alignment:
Q  1 ttagatgtgtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcac 100  Q
    |||||| |||||| ||| |||||||| ||||||||| | |||| |   |||||||||||| ||||||||||||| ||||||| ||||| || |||||||     
T  41961732 ttagatctgtggggcaagtatcaatgacaaccaataaccaaaaaaactacaagcaacaacaatagatctagatctaatctagtaaccaggtttaaagca- 41961634  T
Q  101 aaaccacaatcgaaccaaagaataa 125  Q
    ||||||||||| |||||||||||||    
T  41961633 aaaccacaatcaaaccaaagaataa 41961609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 33990177 - 33990037
Alignment:
Q  2 tagatgtgtgggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcaca 101  Q
    ||||| |||||||||| |||||||| ||| ||||| | ||||||  ||||||||||||| | | ||||||||| ||||||| ||||||||  | |||| |    
T  33990177 tagatttgtgggacaagtatcaatggcaatcaataaccaaaataaacacaagcaacaacaaca-atctagatctaatctagaaaccaagtgcatagca-a 33990080  T
Q  102 aaccacaatcgaaccaaagaat-aacaagataaagagagtaga 143  Q
    | ||| ||| |||||||||||| ||||||||||||||||||||    
T  33990079 atccagaattgaaccaaagaataaacaagataaagagagtaga 33990037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 6199766 - 6199842
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagta 141  Q
    ||||||||| |||||| |||| || |  |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6199766 atctagatctaatctaacaactaattgcaaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagta 6199842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 3786231 - 3786153
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 144  Q
    ||||||||| ||| |||||||||||| |||| || |||  |||||||||||||||||| |||||||||||||||||||||    
T  3786231 atctagatctaatatagcaaccaagtgtaaaaca-aaattacaatcgaaccaaagaatgaacaagataaagagagtagag 3786153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 6719862 - 6719761
Alignment:
Q  28 caaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataaca 127  Q
    ||||||||| | |||| ||||||| |||| ||| | ||||||||||| ||||||| ||||||||  |||||| ||||||||||  |||||||||| ||||    
T  6719862 caaccaataaccaaaacagtcacaggcaaaaacaacagatctagatctaatctagaaaccaagtgcaaagca-aaaccacaataaaaccaaagaacaaca 6719764  T
Q  128 aga 130  Q
    |||    
T  6719763 aga 6719761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 12073678 - 12073586
Alignment:
Q  48 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 141  Q
    ||||||||||||| | | ||||||||| ||||||| ||||||||  | | || ||||||||||| ||||||||||| ||||||||||||||||||    
T  12073678 cacaagcaacaacaaca-atctagatctaatctagaaaccaagtgcataaca-aaaccacaatctaaccaaagaataaacaagataaagagagta 12073586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 40974970 - 40975008
Alignment:
Q  105 cacaatcgaaccaaagaataacaagataaagagagtaga 143  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  40974970 cacaatcgaaccaaagaacaacaagataaagagagtaga 40975008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 12119813 - 12119735
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    ||||||||| ||||||| ||| ||||  | |||| |||||||||||| |||||||| ||| |||||||||||||||||||    
T  12119813 atctagatctaatctagaaactaagtgcatagca-aaaccacaatcggaccaaagactaaacaagataaagagagtagag 12119735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 33090129 - 33090071
Alignment:
Q  86 ccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 144  Q
    |||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||    
T  33090129 ccaagtgtaaagca-aaaccacaatcgaaccaaaaaataaacaagataaagagagcagag 33090071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 27416899 - 27416940
Alignment:
Q  101 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 141  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  27416899 aaaccacaatccaaccaaagaataaacaagataaagagagta 27416940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 32091706 - 32091632
Alignment:
Q  69 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    |||||| |||||||||| ||||| ||||| |  ||||||||| |||| ||||||||| |||||||||||| ||||||    
T  32091706 tagatctaatctagcaaacaagtgtaaagaa--aaccacaattgaactaaagaataaacaagataaagagcgtagag 32091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 26699341 - 26699416
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 141  Q
    ||||||||| ||||||| | ||||||  | |||| |||||| ||| |||||||||||||| ||||||||||||||||    
T  26699341 atctagatctaatctagaatccaagtgcatagca-aaaccataattgaaccaaagaataaacaagataaagagagta 26699416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 55085341 - 55085416
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 141  Q
    ||||||||| ||| ||| ||||||||  | |||| ||||||||||| |||||| |||||| ||||||||||||||||    
T  55085341 atctagatctaatttagaaaccaagtgcatagca-aaaccacaatccaaccaaggaataaacaagataaagagagta 55085416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 11137349 - 11137217
Alignment:
Q  12 ggacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatc 111  Q
    |||||| |||||||| ||||| |||   ||||||  ||||||||||||  | | ||||| ||| |||||||||| ||||||||||| | |||||||||||    
T  11137349 ggacaagtatcaatgacaaccgataatcaaaataaccacaagcaacaataacatatctaaatctaatctagcaatcaagtataaag-aaaaaccacaatc 11137251  T
Q  112 gaaccaaagaat-aacaagataaagagagtagag 144  Q
    ||||||| |||| |||||||||||||||||||||    
T  11137250 gaaccaatgaataaacaagataaagagagtagag 11137217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 3772477 - 3772382
Alignment:
Q  48 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    ||||||||||||| | | ||||||||  ||||||| || |||||  | |||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  3772477 cacaagcaacaacaaca-atctagatttaatctagaaatcaagtgcatagca-aaaccacaatctaaccaaagaataaacaagataaagagagtagag 3772382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 7624846 - 7624919
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 141  Q
    ||||||||| || |||||||||| || ||||| | |||||||||||||||||||||| || |||| ||||||||||    
T  7624846 atctagatctaa-ctagcaaccatgtgtaaagta-aaaccacaatcgaaccaaagaacaataagacaaagagagta 7624919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 10240426 - 10240318
Alignment:
Q  32 caatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa--taacaag 129  Q
    ||||| ||||||||| ||||| ||| ||| | | ||||||||| ||||||| ||| || | ||||||| ||||||||||||||||||| ||   ||||||    
T  10240426 caataactaaaatagccacaaacaataacaaca-atctagatctaatctagaaacgaaatgtaaagca-aaaccacaatcgaaccaaaaaaataaacaag 10240329  T
Q  130 ataaagagagt 140  Q
    |||||||||||    
T  10240328 ataaagagagt 10240318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 40221979 - 40221938
Alignment:
Q  101 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 141  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  40221979 aaaccacaatccaaccaaagaatgaacaagataaagagagta 40221938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 2999740 - 2999780
Alignment:
Q  105 cacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  2999740 cacaatctaaccaaagaataaacaagataaagagagtagag 2999780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 9633488 - 9633590
Alignment:
Q  40 aaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagaga 138  Q
    |||||| ||||||||||||| || | ||||||||| ||| || ||| ||| | ||||  | ||| |||||| |||||||||||||| |||||||||||||    
T  9633488 aaaataatcacaagcaacaa-gacaaatctagatctaatataacaatcaattgtaaaata-aaatcacaattgaaccaaagaataaacaagataaagaga 9633585  T
Q  139 gtaga 143  Q
    |||||    
T  9633586 gtaga 9633590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 11384253 - 11384178
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 141  Q
    ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| |||| ||||||||||||||||    
T  11384253 atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataaagagagta 11384178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 43363321 - 43363447
Alignment:
Q  20 atcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaa 119  Q
    |||||||  |||||||| |||||||   ||||||||||||  | | ||||||||| |||||| |||| |  |  ||||||||||||||||||||||||||    
T  43363321 atcaatggtaaccaataactaaaatgaccacaagcaacaataacaaatctagatctaatctaacaactatttgcaaagcacaaaccacaatcgaaccaaa 43363420  T
Q  120 gaa-taacaagataaagagagtagagt 145  Q
    |||  ||||||||||||||||||||||    
T  43363421 gaacaaacaagataaagagagtagagt 43363447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 5116893 - 5116797
Alignment:
Q  48 cacaagcaacaacgatagatctagatc-gaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 144  Q
    ||||||||||||| ||| ||||||||| |||||| | |||||||| ||||||| || |||||||||||||| | ||||||||||||||||| ||||||    
T  5116893 cacaagcaacaacaatatatctagatctgaatctcgtaaccaagtgtaaagca-aatccacaatcgaaccatataataacaagataaagagggtagag 5116797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 14301374 - 14301446
Alignment:
Q  80 tagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaa 153  Q
    ||||||| |||| | ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  14301374 tagcaactaagtgtcaagca-aaatcacaatcaaatcaaagaataacaagataaagagagtagagtatagaaaa 14301446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 8452099 - 8452173
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 141  Q
    ||||||||| ||||||  || ||| | ||||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  8452099 atctagatctaatctaaaaatcaaatgtaaagca-aaaccacaatcgaaccaaagaatgacaagataaaaagagta 8452173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 22552498 - 22552563
Alignment:
Q  79 ctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagt 145  Q
    ||||||||||||| ||||| | ||||| | |||| ||||||||| ||||||||||||||||||||||    
T  22552498 ctagcaaccaagtgtaaagaa-aaacctcgatcgtaccaaagaacaacaagataaagagagtagagt 22552563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 22328323 - 22328367
Alignment:
Q  101 aaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 144  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  22328323 aaaccacaatcgaacaaaagaataaacaagataaagagagtagag 22328367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 8359197 - 8359293
Alignment:
Q  47 tcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 144  Q
    |||||||||||||| | | ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| || |||||||||| ||||||||||    
T  8359197 tcacaagcaacaacaaca-atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataatgagagtagag 8359293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 1360054 - 1360150
Alignment:
Q  48 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagag 144  Q
    ||||||||||||| | |  | |||||| ||||||  ||| |||| ||||||| ||||||||||||||| ||||||  ||||||||||||||| |||||    
T  1360054 cacaagcaacaacaacaattttagatctaatctaaaaactaagtgtaaagca-aaaccacaatcgaacaaaagaagaaacaagataaagagaatagag 1360150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 29609023 - 29608927
Alignment:
Q  48 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    ||||||||||||| | | ||||||||| ||| ||| ||||||||  | | || ||||||||||| || ||||| |||| |||||||||||||||||||    
T  29609023 cacaagcaacaacaaca-atctagatctaatatagaaaccaagtgcatatcaaaaaccacaatctaagcaaaggataaacaagataaagagagtagag 29608927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 16676498 - 16676408
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagagtatataaaataa 156  Q
    ||||||||| ||||||||||| |||| |||| || ||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||    
T  16676498 atctagatctaatctagcaacaaagtgtaaatca-aaaccacaatcgaaccaaagaacaaactagataaagaaagtagagtatatagaataa 16676408  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 28197213 - 28197084
Alignment:
Q  13 gacaaatatcaatgccaaccaatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcg 112  Q
    |||| ||||||||| |||||||||   ||||||||||||||||||||||  | ||||||||   ||||||||||||||| ||||||| || | ||||| |    
T  28197213 gacacatatcaatggcaaccaataatcaaaatagtcacaagcaacaacggcatatctagattttatctagcaaccaagtgtaaagca-aaccaacaattg 28197115  T
Q  113 aaccaaagaataacaagataaagagagtagag 144  Q
    || ||||||| |||| ||| ||||||||||||    
T  28197114 aatcaaagaacaacatgat-aagagagtagag 28197084  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 30217945 - 30218022
Alignment:
Q  67 tctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 144  Q
    |||||||| ||||||| |||||||| |||| ||||| |||||||| ||||||||||||| |||||||||||||||||||    
T  30217945 tctagatccaatctagaaaccaagtgtaaaacacaa-ccacaatcaaaccaaagaataaacaagataaagagagtagag 30218022  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 42261368 - 42261457
Alignment:
Q  50 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 141  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| || |||| ||||||||| | ||||||  ||||| ||||||||||||||||    
T  42261368 caagcaacaacaatatatctagatctaatctagcaaccaagtgtatagca-aaaccacaaacaaaccaa--aataatcaagataaagagagta 42261457  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 36282852 - 36282892
Alignment:
Q  99 acaaaccacaatcgaaccaaagaataacaagataaagagag 139  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  36282852 acaaagcacaatcgaatcaaagaataacaagataaagagag 36282892  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 7451353 - 7451314
Alignment:
Q  101 aaaccacaatcgaaccaaagaat-aacaagataaagagag 139  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7451353 aaaccacaatcgaaccaaagaataaacaagataaagagag 7451314  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 34811121 - 34811197
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtaga 143  Q
    ||||||||| ||||||||||| || | ||||| | |||| |||| ||||  |||||| ||||||||||||||||||||    
T  34811121 atctagatctaatctagcaactaattgtaaagta-aaactacaaccgaataaaagaacaacaagataaagagagtaga 34811197  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 45727161 - 45727122
Alignment:
Q  101 aaaccacaatcgaaccaaagaataacaagataaagagagta 141  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  45727161 aaaccacaatccaaccaaagaataa-aagataaagagagta 45727122  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 490203 - 490292
Alignment:
Q  50 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 141  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| || |||| ||||||||| | ||||||  ||||| ||||||||||||||||    
T  490203 caagcaacaacaatatatctagatctaatctagcaaccaagtgtatagca-aaaccacaaacaaaccaa--aataatcaagataaagagagta 490292  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 11660888 - 11660831
Alignment:
Q  50 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccaca 108  Q
    ||||||||||| | ||||||||||| |||||||||||||||| ||||||| ||||||||    
T  11660888 caagcaacaacaacagatctagatctaatctagcaaccaagtgtaaagca-aaaccaca 11660831  T

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Target: scaffold0197 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 1295 - 1370
Alignment:
Q  66 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 141  Q
    ||||||||| ||||||| |||||||| ||||| | ||||||||||| ||||||| ||| || |||||||||||||||    
T  1295 atctagatctaatctagaaaccaagtgtaaagta-aaaccacaatcaaaccaaaaaataaataagataaagagagta 1370  T

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