View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_199 (Length: 228)
Name: NF6871A_low_199
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_199 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 26099449 - 26099232
Alignment:
| Q |
11 |
ggagcctcagtcaagattccgaagatacattctaaagtttactactttccacaaggtcacttaaaacatgtctcaactcacacaatcatcacccttcttc |
110 |
Q |
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| T |
26099449 |
ggagcctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcccctcacacaatcatcacccttcttc |
26099350 |
T |
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| Q |
111 |
attgttatcctccttccgtttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgt |
210 |
Q |
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| T |
26099349 |
attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgt |
26099250 |
T |
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| Q |
211 |
aacggaaggccatggcca |
228 |
Q |
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| T |
26099249 |
aatggatggccatggcca |
26099232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 25224937 - 25225016
Alignment:
| Q |
134 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
213 |
Q |
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| T |
25224937 |
tgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25225016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 25289093 - 25289172
Alignment:
| Q |
134 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
213 |
Q |
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| T |
25289093 |
tgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25289172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 25728311 - 25728232
Alignment:
| Q |
134 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
213 |
Q |
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| T |
25728311 |
tgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25728232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
| Q |
20 |
gtcaagattccgaagatacattctaaagtttactactttccacaaggtca |
69 |
Q |
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| T |
25224814 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25224863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
| Q |
20 |
gtcaagattccgaagatacattctaaagtttactactttccacaaggtca |
69 |
Q |
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| T |
25288970 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25289019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 25222655 - 25222582
Alignment:
| Q |
134 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc |
207 |
Q |
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| T |
25222655 |
tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc |
25222582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 25286811 - 25286738
Alignment:
| Q |
134 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc |
207 |
Q |
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| T |
25286811 |
tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc |
25286738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
| Q |
20 |
gtcaagattccgaagatacattctaaagtttactactttccacaaggtca |
69 |
Q |
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| T |
25728434 |
gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca |
25728385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 25618053 - 25618132
Alignment:
| Q |
134 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
213 |
Q |
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| T |
25618053 |
tgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac |
25618132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 25617936 - 25617990
Alignment:
| Q |
26 |
attccgaagatacattctaaagtttactactttccacaaggtcacttaaaacatg |
80 |
Q |
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| T |
25617936 |
attccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatg |
25617990 |
T |
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