View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_2 (Length: 570)
Name: NF6871A_low_2
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 14 - 556
Target Start/End: Complemental strand, 28908388 - 28907845
Alignment:
| Q |
14 |
atggacatcactccatggctagctgcaggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggtaa |
113 |
Q |
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| T |
28908388 |
atggccatcactccatggctagctgcaggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggtaa |
28908289 |
T |
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| Q |
114 |
aatctcttaaattggttgcagccctgtaacttcgttagttgcacatggtcataaatttttatccttagaatctatgaagcacctactctgacactgacac |
213 |
Q |
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| T |
28908288 |
aatctcttaaattggttgcagccctgtaacttcgttagttgcacatggtcataaatttttatccttagaatctatgaagcacctactctgacactgacac |
28908189 |
T |
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| Q |
214 |
ctgtagttttgccatttacaattttttatttggagttgacgtacaaacttagtagttactgaattttggatgtcatcttttacagacagatgatctgcaa |
313 |
Q |
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| T |
28908188 |
ctgtagttttgccatttacatttttttatttggagttgacgtacaaacttagtagttactgaattttggatgtcatcttttacagacagatgatctgcaa |
28908089 |
T |
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| Q |
314 |
gatcgtatcattatttgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataagtgtgctggaatttacctt |
413 |
Q |
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| T |
28908088 |
gatcatatcattatttgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataaatgtgctggaatttacctt |
28907989 |
T |
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| Q |
414 |
tgttattttcagatcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaacacaacat-cctaattgaaatttct |
512 |
Q |
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| T |
28907988 |
tgttattttcagatcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaacacaacatccctaatttaaatttct |
28907889 |
T |
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| Q |
513 |
atccttttcttgtaattgttcttatggatgaatgatttgatgtc |
556 |
Q |
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| T |
28907888 |
atccttttcttgtaattgttcttatggatgaatgatttgatgtc |
28907845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 412 - 489
Target Start/End: Original strand, 11848293 - 11848370
Alignment:
| Q |
412 |
tttgttattttcagatcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaac |
489 |
Q |
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| T |
11848293 |
tttgttattctcagatcattgcacaacttctttctgagcgacttattccttttgtcgcactagatgtgcgaaggtaac |
11848370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 11847812 - 11847897
Alignment:
| Q |
26 |
ccatggctagctgcaggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggt |
111 |
Q |
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| T |
11847812 |
ccatggctaggcgaaggaggccagctgattgcttcccgttttgagcaacatgatgttcgaagcttactacctgtagaaagtgaggt |
11847897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 11848163 - 11848228
Alignment:
| Q |
289 |
tcttttacagacagatgatctgcaagatcgtatcattatttgtggatttggacgagttggccaggt |
354 |
Q |
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| T |
11848163 |
tctttttcagacagacgatctgcgtgatcatatcattatttgtggatttgggcgagttggccaggt |
11848228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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