View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_202 (Length: 227)
Name: NF6871A_low_202
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_202 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 7273637 - 7273844
Alignment:
| Q |
1 |
tcaagtgcacttattagtcttgccattccgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacgtcatgtctttgtgtatga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7273637 |
tcaagtgcacttattagtcttgccattccgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacttcatgtctttgtgtatga |
7273736 |
T |
|
| Q |
101 |
tgtgagggatgtaattatgatgcagaaaacaaagtcctttagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcgatcacatgt |
200 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7273737 |
tgtgagggatgcaattatgatgcagaaaacaaagtcctttagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcgatcacatgt |
7273836 |
T |
|
| Q |
201 |
ctttattc |
208 |
Q |
| |
|
|||||||| |
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|
| T |
7273837 |
ctttattc |
7273844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 5695355 - 5695562
Alignment:
| Q |
1 |
tcaagtgcacttattagtcttgccattccgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacgtcatgtctttgtgtatga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5695355 |
tcaagtgcacttattagtcttgccatttcgaaatccaagactcttgacaccatttcattgtcaagtaatacattgcttgacttcatgtctttgtgtatga |
5695454 |
T |
|
| Q |
101 |
tgtgagggatgtaattatgatgcagaaaacaaagtcctttagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcgatcacatgt |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5695455 |
tgtgagggatgcaattatgatgcagaaaacaaagtcctttagcagcacctcttgcaatcgtcttcctttcttcccatgttaaaattcgtcgatcacatgt |
5695554 |
T |
|
| Q |
201 |
ctttattc |
208 |
Q |
| |
|
|||||||| |
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|
| T |
5695555 |
ctttattc |
5695562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 43883124 - 43882917
Alignment:
| Q |
1 |
tcaagtgcacttattagtcttgccattccgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacgtcatgtctttgtgtatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
43883124 |
tcaagtgcacttattagtcttgccattccgaaattcaagactcttgactccatttcattgtcaagtaatacattgcttgacttcatgtctttgtgtatga |
43883025 |
T |
|
| Q |
101 |
tgtgagggatgtaattatgatgcagaaaacaaagtcctttagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcgatcacatgt |
200 |
Q |
| |
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| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43883024 |
tctgagggatgcaattatgatgcagaaaacaaagtcctatagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcaatcacatgt |
43882925 |
T |
|
| Q |
201 |
ctttattc |
208 |
Q |
| |
|
|||||||| |
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|
| T |
43882924 |
ctttattc |
43882917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 55197639 - 55197432
Alignment:
| Q |
1 |
tcaagtgcacttattagtcttgccattccgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacgtcatgtctttgtgtatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
55197639 |
tcaagtgcacttattagtcttgccattctgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacttcatgtctttgtgtatga |
55197540 |
T |
|
| Q |
101 |
tgtgagggatgtaattatgatgcagaaaacaaagtcctttagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcgatcacatgt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
55197539 |
tgtgagggatgcaattatgatgcagaaaacaaagtcctttagcaaaacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcgtttacatgt |
55197440 |
T |
|
| Q |
201 |
ctttattc |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
55197439 |
ctttattc |
55197432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 1678057 - 1677854
Alignment:
| Q |
1 |
tcaagtgcacttattagtcttgccattccgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacgtcatgtctttgtgtatga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
1678057 |
tcaagtgcacttattagtcttgtcattccgaaatccaagactcttgactccatttcattagcaagtaatacattgcttgacttcatgtcttagtgtatga |
1677958 |
T |
|
| Q |
101 |
tgtgagggatgtaattatgatgcagaaaacaaagtcctttagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcgatcacatgt |
200 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1677957 |
tgtgagtgatgcaattatgatgcagaaaaaaaagtcctttagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcatcgatcacatgt |
1677858 |
T |
|
| Q |
201 |
cttt |
204 |
Q |
| |
|
|||| |
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|
| T |
1677857 |
cttt |
1677854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 20946936 - 20946727
Alignment:
| Q |
1 |
tcaagtgcacttattagtcttgccattccgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacgtcatgtctttgtgtatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
20946936 |
tcaagtgcacttattagtcttgccattccgaaatccaagactcttgactccattttattgtcaagtaatacattgcttgacttcatgtctttgtgtatga |
20946837 |
T |
|
| Q |
101 |
tgtgagggatgtaat--tatgatgcagaaaacaaagtcctttagcagcacctcttgcaatcttcttcctttcttcccatgttaaaattcgtcgatcacat |
198 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |
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|
| T |
20946836 |
tgtgagggatgcaattatatgatgcagaaaataaagtcctttagtagcacctcttgcaatcttcttcctttctttgcatgttaaaattcgtcgttcaaat |
20946737 |
T |
|
| Q |
199 |
gtctttattc |
208 |
Q |
| |
|
|||||||||| |
|
|
| T |
20946736 |
gtctttattc |
20946727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 2672285 - 2672129
Alignment:
| Q |
3 |
aagtgcacttattagtcttgccattccgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacgtcatgtctttgtgtatgatg |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2672285 |
aagtgcacttattagtcttgccatttcgaaatccaagactcttgactccatttcattgtcaagtaatacattgcttgacttcatgtctttgtgtatgatg |
2672186 |
T |
|
| Q |
103 |
tgagggatgtaattatgatgcagaaaacaaagtcctttagcagcacctcttgcaatc |
159 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2672185 |
tgagggatgcaattatgatgtagaaaacaaagtcctttagtagcacctcttgcaatc |
2672129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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