View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_203 (Length: 227)
Name: NF6871A_low_203
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_203 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21201276 - 21201505
Alignment:
| Q |
1 |
ttgttttatcttcattatcagtattgtaattgttccaccgttaatacaattatagagtttctctcatatctt---cttatcattacagtgttccattcac |
97 |
Q |
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| T |
21201276 |
ttgttttatcttcattatcagtattgtaattgttccaccattaatacaattacagagtttctctcatatcttcttcttatcattacagtgttccattcac |
21201375 |
T |
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| Q |
98 |
caaatcacacacacacctatcaattggtccgacctaccggatcaaaatcaccaccgtatcggaatttgtagatgccaagaaagcctaaaatggcagaccg |
197 |
Q |
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| T |
21201376 |
caaatcacacacacacgtatcaattggtccgacctaccggatcaaaatcaccaccgtaccagaatttgtagataccaagaaagcctaaaatggcagaccg |
21201475 |
T |
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| Q |
198 |
tgttgatgcgttagaagagcagatggttga |
227 |
Q |
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| T |
21201476 |
tgttgatgcgttagaagaacagatggttga |
21201505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 30957756 - 30957728
Alignment:
| Q |
114 |
ctatcaattggtccgacctaccggatcaa |
142 |
Q |
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| T |
30957756 |
ctatcaattggtccgacctaccggatcaa |
30957728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 40235031 - 40235128
Alignment:
| Q |
92 |
attcaccaaatcacacacacacctatcaattggtccgacctaccggatcaaaatcaccaccgtatcggaatttgtagatgccaagaaagcctaaaatgg |
190 |
Q |
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| T |
40235031 |
attcatcaattcacacacacacctatcaattggtccgacctaccggatcaaaatcaccaccgtaccggaa-ttgtagatgccaccaaagcctaagatgg |
40235128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 46440549 - 46440452
Alignment:
| Q |
92 |
attcaccaaatcacacacacacctatcaattggtccgacctaccggatcaaaatcaccaccgtatcggaatttgtagatgccaagaaagcctaaaatgg |
190 |
Q |
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| T |
46440549 |
attcatcaattcacacacacacctatcaattggtccgacctaccggatcaaaatcaccaccgtaccggaa-ttgtagatgccaccaaagcctaagatgg |
46440452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 54359116 - 54359144
Alignment:
| Q |
114 |
ctatcaattggtccgacctaccggatcaa |
142 |
Q |
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| T |
54359116 |
ctatcaattggtccgacctaccggatcaa |
54359144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 28515331 - 28515235
Alignment:
| Q |
116 |
atcaattggtccgacctaccggatc--aaaatcaccaccgtatcgg-aatttgtagatgccaagaaagcctaaaatggcagaccgtgttgatgcgtt |
209 |
Q |
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||||||||||||||||||||||||| |||| ||||| | | ||| || ||||||||||||||||| ||||| |||| |||||| | |||||||| |
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| T |
28515331 |
atcaattggtccgacctaccggatcaaaaaaccaccaacacaccggaaaattgtagatgccaagaaaacctaagatgggtgaccgtttagatgcgtt |
28515235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 7184 - 7212
Alignment:
| Q |
114 |
ctatcaattggtccgacctaccggatcaa |
142 |
Q |
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| T |
7184 |
ctatcaattggtccgacctaccggatcaa |
7212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 9488 - 9516
Alignment:
| Q |
114 |
ctatcaattggtccgacctaccggatcaa |
142 |
Q |
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| T |
9488 |
ctatcaattggtccgacctaccggatcaa |
9516 |
T |
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