View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_209 (Length: 224)
Name: NF6871A_low_209
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_209 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 53097340 - 53097123
Alignment:
| Q |
7 |
tgcctatgatggttaagagtgaaaatggttgcaaagttgaagtgcatgactctgaattgtctattgaaatggggtgtgtagtttttaagttgcattgtgt |
106 |
Q |
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| T |
53097340 |
tgcctatgatggttaagagtgaaaatggttgcaaagttgaagtgcatgactctgaattgtctattgaaatggggtgtgtagtttttaagttgcattgtgt |
53097241 |
T |
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| Q |
107 |
gaaatctctattttcaaattctttttcatatttatttattgtgttttgtcatcatattgcagattaaatgtgtccacagaatcacaattttcacatattg |
206 |
Q |
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| T |
53097240 |
gaaatctctattttcaaattctttttcatatttatttattgtgttttgtcatcatattgcagattaaatgtgtccacagaatcgcaattttcacatattg |
53097141 |
T |
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| Q |
207 |
ggggaaaagtagaagtgg |
224 |
Q |
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|||||||||||||||||| |
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| T |
53097140 |
ggggaaaagtagaagtgg |
53097123 |
T |
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