View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_211 (Length: 222)
Name: NF6871A_low_211
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_211 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 434158 - 434316
Alignment:
| Q |
3 |
ataccagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcataaatctgtcat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
434158 |
ataccagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttgactgtcttaatcataaatctgtcat |
434257 |
T |
|
| Q |
103 |
cttgggtcaagtggaagaaaattccaattttgccaggagattaaagctacctgagggaa |
161 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
434258 |
cttgggtcaagtggaagaaaattccacttttgccaggagattaaagctccctgagggaa |
434316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 32938617 - 32938459
Alignment:
| Q |
1 |
tcataccagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcataaatctgtc |
100 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| || |
|
|
| T |
32938617 |
tcatactagtttgaacaaacatggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttcaccgtctttatcataaatctatc |
32938518 |
T |
|
| Q |
101 |
atcttgggtcaagtggaagaaaattccaattttgccaggagattaaagctacctgaggg |
159 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
32938517 |
atcttgggtcaagtagaagaagcttccacttttgccaggagatgaaagctccctgaggg |
32938459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 434350 - 434379
Alignment:
| Q |
158 |
ggaaatggcttcctcaattgtaaaagaact |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
434350 |
ggaaatggcttcctcaattgtaaaagaact |
434379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 24524459 - 24524401
Alignment:
| Q |
56 |
aaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttgggtcaagt |
114 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24524459 |
aaccttgacttcagatttcttcactgtcttaatcatgaatctgtcatcttgggtcaagt |
24524401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University