View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_212 (Length: 222)
Name: NF6871A_low_212
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_212 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 36163122 - 36162907
Alignment:
| Q |
8 |
atggtgttacatagttataccacagcatagtttaaaatagggcaaaattaacaagcgtgtaaaaatacaaggcgcatccaattgtcaagaactcaagaca |
107 |
Q |
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| T |
36163122 |
atggagttacatagttataccacagcatagtttaaaatagggcaaaattaacaagcgtgtaaaaatacaaggcacatccaattgtcaagaactcaagtca |
36163023 |
T |
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| Q |
108 |
gatagtttagtaaaaatacaaggccagtcttaatcaacttaaatgcagtaagacggat-nnnnnnnggacagcaagaggtttcaccttaaggagatacag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
36163022 |
gatagtttagtaaaaatacaaggccagtcttaatcaactttaatgcagtaagacggataaaaaaaaggacagcaagaggcttcaccttaaggagatacag |
36162923 |
T |
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| Q |
207 |
ctgggtcaaattcaag |
222 |
Q |
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|||||||||||||||| |
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| T |
36162922 |
ctgggtcaaattcaag |
36162907 |
T |
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