View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_216 (Length: 221)
Name: NF6871A_low_216
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_216 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 44952478 - 44952267
Alignment:
| Q |
7 |
aagtatgtgtgtgtaagtggtcatcatatcttgacaaacctaagtgcggggaacacaaacacactagatgtggatctatttgttggatcacatgagaaca |
106 |
Q |
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| T |
44952478 |
aagtatgtgtgtttaa-tggtcatcatatcttgacaaacctaagtgtggggaacacaaacacactagatgtggatctatttgttggatcacatgagaaca |
44952380 |
T |
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| Q |
107 |
atgagaggggaattcctaagtgacataggcagtacttaattcacgatgtcagaagctaccatgcaacactcctatgttgttttgtgtgtcacatatatgg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44952379 |
atgagaggggaattcctaagtgacataggcagtacttaattcacgatgtcagaagctaccatgca--actcctatgttgttttgtgtgtcacatatatgg |
44952282 |
T |
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| Q |
207 |
acatcgatcgagtag |
221 |
Q |
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| T |
44952281 |
acatcgatcgagtag |
44952267 |
T |
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