View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_217 (Length: 221)
Name: NF6871A_low_217
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_217 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46239091 - 46238870
Alignment:
| Q |
1 |
tcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattt-acaccacagcctaatct |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46239091 |
tcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacaccacagcctaatct |
46238992 |
T |
|
| Q |
100 |
catggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttgaaccccacctct |
199 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238991 |
catggtcttgataaccccagctacaaacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttgaaccccacctct |
46238892 |
T |
|
| Q |
200 |
gtagaatatggtttcttccctg |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46238891 |
gtagaatatggtttcttccctg |
46238870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3455566 - 3455788
Alignment:
| Q |
1 |
tcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattt-acaccacagcctaatct |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3455566 |
tcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatccattttacaccacagcctaatct |
3455665 |
T |
|
| Q |
100 |
catggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttgaa-ccccacctc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
3455666 |
catggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggttttaacccccacctc |
3455765 |
T |
|
| Q |
199 |
tgtagaatatggtttcttccctg |
221 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
3455766 |
tgtagaatacggtttcttccctg |
3455788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University