View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_218 (Length: 220)
Name: NF6871A_low_218
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_218 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 46844716 - 46844530
Alignment:
| Q |
13 |
tccaaaaatatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcac |
112 |
Q |
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| T |
46844716 |
tccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcac |
46844617 |
T |
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| Q |
113 |
tatcattccttcaaggaatcgttctaattctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagacacgg |
199 |
Q |
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| T |
46844616 |
tatcattccttcaaggaatcggtctaattctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagacacgg |
46844530 |
T |
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Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 48942 - 48986
Alignment:
| Q |
23 |
tcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
67 |
Q |
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| T |
48942 |
tcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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