View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_222 (Length: 218)
Name: NF6871A_low_222
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_222 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 34444070 - 34444249
Alignment:
| Q |
20 |
gttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattggttcatttaatggaagtggtagatatc |
119 |
Q |
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| T |
34444070 |
gttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattggttcatttaatggaagtggtagatatc |
34444169 |
T |
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| Q |
120 |
aagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaaattgat |
199 |
Q |
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| T |
34444170 |
aagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaaattgat |
34444249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 34437332 - 34437498
Alignment:
| Q |
29 |
tctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattggttcatttaatggaagtggtagatatcaagacgatg |
128 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34437332 |
tctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagatgggacattggttcatttaatggaagtggtagatatcaagatgatg |
34437431 |
T |
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| Q |
129 |
tttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaaat |
195 |
Q |
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| T |
34437432 |
tttatgatagaatttggtttcctcttaaatcctcttcatggaaatctataagcacttcttcaaaaat |
34437498 |
T |
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