View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_225 (Length: 216)
Name: NF6871A_low_225
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_225 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 43040030 - 43039815
Alignment:
| Q |
1 |
aattaagtagagttttgtacctaaaccacgagctgcaacatctgttgcagtcattataggactctttccagatttaaactctgaaagcacccaatctctt |
100 |
Q |
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| T |
43040030 |
aattaagcagagttttgtacctaaaccacgagctgcaacatctgttgcagtcattataggactctttccagatttaaactctgaaagcacccaatctctt |
43039931 |
T |
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| Q |
101 |
tctgcttgacttttgtttccatgaattgaaagtgcaggccaaccatccatgcggagctgcctagtaatctgatcacatccctctttagtgtccatgaata |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43039930 |
tctgcttgacttttgtctccatgaattgaaagtgcaggccaaccatccatgcggagctgcctagtaatctgatcacatccctttttagtgtccatgaata |
43039831 |
T |
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| Q |
201 |
tcaatattcggcttcc |
216 |
Q |
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|||||||||||||||| |
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| T |
43039830 |
tcaatattcggcttcc |
43039815 |
T |
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