View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_226 (Length: 216)

Name: NF6871A_low_226
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_226
NF6871A_low_226
[»] chr4 (4 HSPs)
chr4 (23-195)||(22336028-22336199)
chr4 (78-194)||(22321811-22321927)
chr4 (88-186)||(22049938-22050036)
chr4 (132-181)||(22200229-22200278)
[»] chr7 (2 HSPs)
chr7 (83-185)||(23392604-23392706)
chr7 (70-162)||(23396017-23396109)
[»] chr2 (2 HSPs)
chr2 (113-190)||(33851546-33851623)
chr2 (84-194)||(19898382-19898492)
[»] scaffold0512 (2 HSPs)
scaffold0512 (51-107)||(10651-10707)
scaffold0512 (132-186)||(10750-10804)
[»] chr6 (1 HSPs)
chr6 (120-188)||(18736670-18736738)
[»] chr1 (1 HSPs)
chr1 (78-186)||(9883535-9883643)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 22336199 - 22336028
Alignment:
Q  23 aagaaaaataatgttactaaaagccaaaaggtgataaaatattgtgaataagattaattagaaaatggtgtgaaaaataacataccactattagttacaa 122  Q
    |||||||  ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22336199 aagaaaataaatgttactaaaa-ccaaaagatgataaaatatcgtgaataagattaattagaaaatggtgtgaaaaataacataccactattagttacaa 22336101  T
Q  123 taagaagtagagaaagaaagctaatcaaagcatgaacaaataagagaatttgagtcatattttttcaccttta 195  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  22336100 taagaagtagagaaagaaagctaatcaaaacatgaacaaataagagaatttgagtcatattttttcgccttta 22336028  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 22321927 - 22321811
Alignment:
Q  78 aattagaaaatggtgtgaaaaataacataccactattagttacaataagaagtagagaaagaaagctaatcaaagcatgaacaaataagagaatttgagt 177  Q
    |||||||||||||| |||||||| ||||||||| ||| ||||||| ||||| || ||||| | || | || ||| ||| | |||| |||||||||||||     
T  22321927 aattagaaaatggtatgaaaaatgacataccaccattggttacaacaagaaataaagaaatagagatgatgaaaacataagcaaacaagagaatttgagc 22321828  T
Q  178 catattttttcaccttt 194  Q
    ||||||||||| |||||    
T  22321827 catattttttctccttt 22321811  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 22049938 - 22050036
Alignment:
Q  88 tggtgtgaaaaataacataccactattagttacaataagaagtagagaaagaaagctaatcaaagcatgaacaaataagagaatttgagtcatattttt 186  Q
    |||||||||||   ||||||||| ||| |||||||||| || ||  ||||||||| | |||||| ||| || ||| | ||||||||||| |||||||||    
T  22049938 tggtgtgaaaagagacataccaccattggttacaataataaatatggaaagaaagatgatcaaatcataaataaacatgagaatttgagccatattttt 22050036  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 22200278 - 22200229
Alignment:
Q  132 gagaaagaaagctaatcaaagcatgaacaaataagagaatttgagtcata 181  Q
    ||||||||||| |||||||||||| |||| ||||| ||||||||| ||||    
T  22200278 gagaaagaaagataatcaaagcataaacacataagtgaatttgagccata 22200229  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 23392706 - 23392604
Alignment:
Q  83 gaaaatggtgtgaaaaataacataccactattagttacaataagaagtagagaaagaaagctaatcaaagcatgaacaaataagagaatttgagtcatat 182  Q
    ||||||||||||||| || |||||||||| || ||| ||| ||||| ||||||||||||| | || ||||  | || |||   |||||||||||||||||    
T  23392706 gaaaatggtgtgaaagatgacataccactgttggtttcaacaagaaatagagaaagaaagatgattaaagtgtaaataaacttgagaatttgagtcatat 23392607  T
Q  183 ttt 185  Q
    |||    
T  23392606 ttt 23392604  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 23396017 - 23396109
Alignment:
Q  70 ataagattaattagaaaatggtgtgaaaaataacataccactattagttacaataagaagtagagaaagaaagctaatcaaagcatgaacaaa 162  Q
    ||||||| |||||| ||||| || ||||||| ||||||||| |||  ||| ||||| || ||||||||||||   ||||||||||| ||||||    
T  23396017 ataagataaattagtaaatgttgggaaaaattacataccaccatttattagaataaaaaatagagaaagaaataaaatcaaagcataaacaaa 23396109  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 33851623 - 33851546
Alignment:
Q  113 ttagttacaataagaagtagagaaagaaagctaatcaaagcatgaacaaataagagaatttgagtcatattttttcac 190  Q
    |||||||||| ||||| ||||||||||||| | |||||| ||| ||  || | ||||||||||| |||||||||||||    
T  33851623 ttagttacaacaagaaatagagaaagaaagatgatcaaaacataaatgaacatgagaatttgagccatattttttcac 33851546  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 19898382 - 19898492
Alignment:
Q  84 aaaatggtgtgaaaaataacataccactattagt--tacaataagaagtagagaaagaaagctaatcaaagcatgaacaaataagagaatttgagtcata 181  Q
    ||||||||||||||||| |||||||  | |||||  ||||| ||||  | |||||| || | | |||||||||| |||| | ||||||||||||| ||||    
T  19898382 aaaatggtgtgaaaaatgacatacc--ttttagtggtacaacaagagatggagaaaaaaggatgatcaaagcataaacataaaagagaatttgagccata 19898479  T
Q  182 ttttttcaccttt 194  Q
    ||||||| |||||    
T  19898480 ttttttctccttt 19898492  T

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Target: scaffold0512 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 10651 - 10707
Alignment:
Q  51 aggtgataaaatattgtgaataagattaattagaaaatggtgtgaaaaataacatac 107  Q
    ||||||||||||| |||| |||||||  |||| ||||||||||||||||| ||||||    
T  10651 aggtgataaaatactgtgtataagatagattataaaatggtgtgaaaaatgacatac 10707  T

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Target: scaffold0512; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 10750 - 10804
Alignment:
Q  132 gagaaagaaagctaatcaaagcatgaacaaataagagaatttgagtcatattttt 186  Q
    ||||||||||| |||||||||||| |||||| | |||||| |||| |||||||||    
T  10750 gagaaagaaagataatcaaagcataaacaaacatgagaatgtgagccatattttt 10804  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 18736738 - 18736670
Alignment:
Q  120 caataagaagtagagaaagaaagctaatcaaagcatgaacaaataagagaatttgagtcatattttttc 188  Q
    ||||||||| | || |||||||| | |||||||||| |||||||| ||||| ||||| |||||||||||    
T  18736738 caataagaaatggaaaaagaaagatgatcaaagcataaacaaatatgagaaattgagccatattttttc 18736670  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 9883535 - 9883643
Alignment:
Q  78 aattagaaaatggtgtgaaaaataacataccactattagttacaataagaagtagagaaagaaagctaatcaaagcatgaacaaataagagaatttgagt 177  Q
    |||||||||||| |||||||||| ||||||   || | ||||||| ||||| | |||| |||||| | || ||||||| |||||| |   |||||||||     
T  9883535 aattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgattaaagcataaacaaacacacgaatttgaga 9883634  T
Q  178 catattttt 186  Q
    |||||||||    
T  9883635 catattttt 9883643  T

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