View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_229 (Length: 212)

Name: NF6871A_low_229
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_229
NF6871A_low_229
[»] scaffold0036 (1 HSPs)
scaffold0036 (97-206)||(50164-50273)
[»] scaffold0380 (1 HSPs)
scaffold0380 (97-208)||(14536-14647)
[»] chr5 (1 HSPs)
chr5 (97-206)||(38015878-38015987)
[»] scaffold0159 (1 HSPs)
scaffold0159 (97-204)||(33194-33299)
[»] chr2 (3 HSPs)
chr2 (97-204)||(5788821-5788926)
chr2 (97-204)||(3395400-3395507)
chr2 (26-59)||(31897095-31897128)
[»] chr8 (4 HSPs)
chr8 (97-195)||(23141752-23141850)
chr8 (97-204)||(10901390-10901497)
chr8 (97-195)||(42797242-42797340)
chr8 (97-195)||(13756568-13756666)
[»] chr3 (1 HSPs)
chr3 (97-195)||(50331915-50332013)
[»] chr4 (1 HSPs)
chr4 (97-204)||(13228724-13228830)
[»] chr1 (1 HSPs)
chr1 (97-204)||(43387047-43387154)
[»] chr6 (1 HSPs)
chr6 (97-191)||(1599714-1599808)
[»] scaffold0281 (2 HSPs)
scaffold0281 (26-59)||(3101-3134)
scaffold0281 (26-59)||(21208-21241)


Alignment Details
Target: scaffold0036 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 50273 - 50164
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50273 agttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 50174  T
Q  197 gtccatctca 206  Q
    ||| ||||||    
T  50173 gtcaatctca 50164  T

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Target: scaffold0380 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 14536 - 14647
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||  ||||| ||||| ||||  ||||||| |||| ||||||||||||||||||    
T  14536 agttaaaataacacattgaatgcaatagtagatgttgaacaacatataaatgagatgactcacatatttaatgtcttaagattttgggtgaagttgtgat 14635  T
Q  197 gtccatctcatt 208  Q
    ||| ||||||||    
T  14636 gtcaatctcatt 14647  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 38015987 - 38015878
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    |||||||||||||| |||||||| ||||||||||| || ||||||||||  ||||| ||||| ||||| |||| || |||| ||||||||||||||||||    
T  38015987 agttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgacttaagattttgggtgaagttgtgat 38015888  T
Q  197 gtccatctca 206  Q
    ||| ||||||    
T  38015887 gtcaatctca 38015878  T

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Target: scaffold0159 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 33299 - 33194
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||  ||||| ||||  ||||| ||||||| |||| ||||||||||||||||||    
T  33299 agttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaagattttgggtgaagttgtgat 33202  T
Q  197 gtccatct 204  Q
    ||| ||||    
T  33201 gtcaatct 33194  T

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Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 5788926 - 5788821
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||  ||||| ||||  ||||| ||||||| |||| ||||||||||||||||||    
T  5788926 agttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaagattttgggtgaagttgtgat 5788829  T
Q  197 gtccatct 204  Q
    ||| ||||    
T  5788828 gtcaatct 5788821  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 3395507 - 3395400
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| ||||| ||||| ||||||| |||| ||||||||||||||||||    
T  3395507 agttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaatgtcttaagattttgggtgaagttgtgat 3395408  T
Q  197 gtccatct 204  Q
    ||| ||||    
T  3395407 gtcaatct 3395400  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 31897095 - 31897128
Alignment:
Q  26 tttggtgtttggatatggcagaaatgttcatttc 59  Q
    ||||||||||||||||||||||||||||||||||    
T  31897095 tttggtgtttggatatggcagaaatgttcatttc 31897128  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 23141850 - 23141752
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtga 195  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||||||||||    
T  23141850 agttaaaataacacattgaatgcaatagtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtga 23141752  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 10901497 - 10901390
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||| ||  ||||| ||||  ||||| ||||| | |||| ||||||||||||||||||    
T  10901497 agttaaaataacacattgaatgcaatagtagatgttgagtaacatacaagtgagatgactcgtatatctaatgtgttaagattttgggtgaagttgtgat 10901398  T
Q  197 gtccatct 204  Q
    ||| ||||    
T  10901397 gtcaatct 10901390  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 42797340 - 42797242
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtga 195  Q
    |||||||||||||| |||||||| |||||| |||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||||||||||    
T  42797340 agttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtga 42797242  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 13756568 - 13756666
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtga 195  Q
    |||||||||||||| |||||||| ||||||||||| ||  ||||| |||  || || |||||  |||| ||||||| |||| |||||||||||||||||    
T  13756568 agttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtgaaatgactcatgtatctaatgtcttaagattttgggtgaagttgtga 13756666  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 50332013 - 50331915
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtga 195  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||||||||||    
T  50332013 agttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtga 50331915  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 13228724 - 13228830
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| ||||| ||||| ||| ||| || | ||||||||||||||||||    
T  13228724 agttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaat-tcttaaaattttgggtgaagttgtgat 13228822  T
Q  197 gtccatct 204  Q
    ||| ||||    
T  13228823 gtcaatct 13228830  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 43387154 - 43387047
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgat 196  Q
    ||||||||| |||| |||||||| ||||||||||| ||  |||||||||  || || ||||  ||||| ||||||| |||| ||||||||||||||||||    
T  43387154 agttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtcttaagattttgggtgaagttgtgat 43387055  T
Q  197 gtccatct 204  Q
    ||| ||||    
T  43387054 gtcaatct 43387047  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 1599714 - 1599808
Alignment:
Q  97 agttaaaataacacgttgaatgcgatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagtt 191  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||||||    
T  1599714 agttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaagtt 1599808  T

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Target: scaffold0281 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 3101 - 3134
Alignment:
Q  26 tttggtgtttggatatggcagaaatgttcatttc 59  Q
    ||||||||||||||||||||||||||||||||||    
T  3101 tttggtgtttggatatggcagaaatgttcatttc 3134  T

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Target: scaffold0281; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 21208 - 21241
Alignment:
Q  26 tttggtgtttggatatggcagaaatgttcatttc 59  Q
    |||||||||||||||||||| |||||||||||||    
T  21208 tttggtgtttggatatggcataaatgttcatttc 21241  T

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