View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_232 (Length: 211)
Name: NF6871A_low_232
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_232 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0064 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 3623669 - 3623487
Alignment:
| Q |
27 |
gtcccaaacagtcatttacgacgacgtagaatatttttaattttaagttcaattaaatctataaattttggaaaaggaaaatgttttatttgacgataga |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3623669 |
gtcccaaacagtcatttacgacgacgtagaatacttttaattttaagttcaattaaatctataaattttggaaaaggaaaatgctttatttgacgataga |
3623570 |
T |
|
| Q |
127 |
aaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctctcaccccat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3623569 |
aaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctctcaccccat |
3623487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 17922994 - 17922887
Alignment:
| Q |
99 |
aaaggaaaatgttttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattc |
198 |
Q |
| |
|
||||||||||| |||||| |||| | |||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
17922994 |
aaaggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattc |
17922895 |
T |
|
| Q |
199 |
tctcaccc |
206 |
Q |
| |
|
|||||||| |
|
|
| T |
17922894 |
tctcaccc |
17922887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 45395562 - 45395451
Alignment:
| Q |
100 |
aaggaaaatgttttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattct |
199 |
Q |
| |
|
|||||||||| |||||| |||| | |||||||||||||||| ||||| | | |||||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
45395562 |
aaggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattct |
45395463 |
T |
|
| Q |
200 |
ctcaccccatgt |
211 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
45395462 |
ctcatcccatgt |
45395451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 20051 - 19942
Alignment:
| Q |
102 |
ggaaaatgttttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctct |
201 |
Q |
| |
|
|||||||| |||||| |||| | |||||||||||||||| |||| | | ||||| || |||||||||||||| |||||||||| | |||||||||||| |
|
|
| T |
20051 |
ggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctct |
19952 |
T |
|
| Q |
202 |
caccccatgt |
211 |
Q |
| |
|
|| ||||||| |
|
|
| T |
19951 |
catcccatgt |
19942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University