View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_237 (Length: 206)
Name: NF6871A_low_237
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_237 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 21001944 - 21002123
Alignment:
| Q |
15 |
gacatcacacagactgcttattaccttcctcaagctgcggtcactcggttttagtccctttgaaatcatggtagtaagataatgcaaagaactggacaaa |
114 |
Q |
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| T |
21001944 |
gacatcacacagactgcttattaccttcctcaagctgcggtcactcggttttagtccctttgaaatcatggtagtaagataatgcaaagaactggacaaa |
21002043 |
T |
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| Q |
115 |
tccttacattgcaagaaaccatagacaagatagttttgaccaacttcgtcgagtacaattttcttctctttcatatcagt |
194 |
Q |
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| T |
21002044 |
tccttacattgcaagaaaccatagacaagatagttttgaccaacttcgtcgagtacaattttcttctctttcatatcagt |
21002123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 20990676 - 20990855
Alignment:
| Q |
15 |
gacatcacacagactgcttattaccttcctcaagctgcggtcactcggttttagtccctttgaaatcatggtagtaagataatgcaaagaactggacaaa |
114 |
Q |
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|||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | ||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20990676 |
gacatcacacaggctgcttattaccttccttaagcttcggtcacttggtttgattccttttgaaatcatggtagtaagatgatgcaaagaactggacaaa |
20990775 |
T |
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| Q |
115 |
tccttacattgcaagaaaccatagacaagatagttttgaccaacttcgtcgagtacaattttcttctctttcatatcagt |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| |
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| T |
20990776 |
tccttacattgcaagaaaccatagacaagatagttttgaccaacttcgttgagcacaattttcttctcttccatttcagt |
20990855 |
T |
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