View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_243 (Length: 203)
Name: NF6871A_low_243
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_243 |
 | |
|
| [»] scaffold0175 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 31502804 - 31502655
Alignment:
| Q |
32 |
aatatatcaatataagatgggacatgtctataccgcataaagtcttgtgtgatgatccatatatatttcaagctctttcctttggaattgcacttataaa |
131 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31502804 |
aatatatcaatataggatgggacatgtctacaccgtataaagtcttgtgtgatgatccatatatatttcaagctctttcctttggaattgcacttataaa |
31502705 |
T |
|
| Q |
132 |
atgtggaagtacacactaccttttatgtgcattttactcttctttttact |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31502704 |
atgtggaagtacacactaccttttatgtgcattttactcttctttttact |
31502655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 29276174 - 29276331
Alignment:
| Q |
32 |
aatatatcaatataagatgggacatgtctataccgcataaagtcttgtgtgatgatccatatatatttcaagctctttcctttgga----------attg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
29276174 |
aatatatcaatataagatgggacatgtctataccgtataaagtct--tgtgatgatccatatatatttcaagctcttcccttaggaatatgatactattg |
29276271 |
T |
|
| Q |
122 |
cacttataaaatgtggaagtacacactaccttttatgtgcattttactcttctttttact |
181 |
Q |
| |
|
||||||| |||||| || ||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
29276272 |
cacttattaaatgtacaaatacacactaccctttgtgtgcattttactcttctttttact |
29276331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 55858418 - 55858267
Alignment:
| Q |
32 |
aatatatcaatataagatgggacatgtctataccgcataaagtcttgtgtgatgatccatatatatttcaagctctttcctttgga----------attg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
55858418 |
aatatatcaatataagatgggacatgtctataccgtataaagtct--tgtgatgatccatatatatttcaagctcttaccttaggaatatgatactattg |
55858321 |
T |
|
| Q |
122 |
cacttataaaatgtggaagtacacactaccttttatgtgcattttactcttctt |
175 |
Q |
| |
|
||||||| |||||| || ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
55858320 |
cacttattaaatgtacaaatacacactaccctttgtgtgcattttactcttctt |
55858267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 27959 - 27919
Alignment:
| Q |
141 |
tacacactaccttttatgtgcattttactcttctttttact |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27959 |
tacacactaccttttatgtgcattttactcttctttttact |
27919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University