View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_244 (Length: 201)
Name: NF6871A_low_244
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_244 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 10368784 - 10368671
Alignment:
| Q |
68 |
aggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtg |
167 |
Q |
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| T |
10368784 |
aggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagtacgggttgtg |
10368685 |
T |
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| Q |
168 |
atgaaggagatgat |
181 |
Q |
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| T |
10368684 |
atgaaggagatgat |
10368671 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 10368871 - 10368838
Alignment:
| Q |
21 |
tactccacaattgttccttaagacacacacacgc |
54 |
Q |
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| T |
10368871 |
tactccacaattgttccttaagacacacacacgc |
10368838 |
T |
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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 11659653 - 11659585
Alignment:
| Q |
72 |
gtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaat |
140 |
Q |
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| T |
11659653 |
gtgagatcgaaatgcaaacccataccttgaaatagtagcctccttcttgttcttgctgtccttttcaat |
11659585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 11668822 - 11668754
Alignment:
| Q |
72 |
gtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaat |
140 |
Q |
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| T |
11668822 |
gtgagatcgaaatgcaaaccgataccttgaaatagtagcctccttcttctttttgctgtccttttcaat |
11668754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 53239290 - 53239215
Alignment:
| Q |
102 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatgaaggaga |
177 |
Q |
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| T |
53239290 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagcgctggttgcaatgaaggaga |
53239215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 2170405 - 2170330
Alignment:
| Q |
102 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatgaaggaga |
177 |
Q |
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| T |
2170405 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagcgctggttgcaatgaaggaga |
2170330 |
T |
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