View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_245 (Length: 201)

Name: NF6871A_low_245
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_245
NF6871A_low_245
[»] chr8 (8 HSPs)
chr8 (30-194)||(28846502-28846666)
chr8 (38-187)||(27190660-27190809)
chr8 (36-187)||(13152531-13152682)
chr8 (30-187)||(14446714-14446870)
chr8 (37-187)||(24333602-24333752)
chr8 (149-187)||(16532768-16532806)
chr8 (112-187)||(9256355-9256427)
chr8 (35-73)||(9256307-9256345)
[»] chr4 (8 HSPs)
chr4 (30-187)||(31944497-31944654)
chr4 (123-187)||(4325387-4325450)
chr4 (149-187)||(12211363-12211401)
chr4 (36-84)||(24104671-24104719)
chr4 (37-79)||(51379529-51379571)
chr4 (66-128)||(24104597-24104659)
chr4 (149-187)||(53693171-53693209)
chr4 (149-187)||(55464797-55464835)
[»] chr3 (7 HSPs)
chr3 (37-186)||(3857014-3857163)
chr3 (37-187)||(51261867-51262017)
chr3 (44-187)||(15667868-15668011)
chr3 (149-187)||(43137127-43137165)
chr3 (149-187)||(24908530-24908568)
chr3 (149-187)||(31989029-31989067)
chr3 (149-187)||(37382006-37382044)
[»] chr2 (3 HSPs)
chr2 (30-187)||(12539455-12539612)
chr2 (30-187)||(34317604-34317761)
chr2 (153-187)||(35649797-35649831)
[»] chr5 (5 HSPs)
chr5 (30-184)||(8785664-8785817)
chr5 (30-187)||(3055362-3055520)
chr5 (36-187)||(11852602-11852753)
chr5 (30-176)||(27168943-27169089)
chr5 (94-187)||(23244707-23244800)
[»] chr7 (12 HSPs)
chr7 (30-187)||(43727877-43728034)
chr7 (30-187)||(9230282-9230439)
chr7 (96-187)||(23804635-23804726)
chr7 (35-154)||(24276397-24276517)
chr7 (100-187)||(23180022-23180109)
chr7 (30-151)||(5287949-5288070)
chr7 (30-165)||(25024464-25024599)
chr7 (133-187)||(8638598-8638652)
chr7 (149-187)||(45197644-45197682)
chr7 (149-187)||(19399978-19400016)
chr7 (149-187)||(27387443-27387481)
chr7 (159-187)||(18375416-18375444)
[»] chr1 (11 HSPs)
chr1 (38-187)||(48606749-48606898)
chr1 (30-187)||(30559142-30559299)
chr1 (30-187)||(9637003-9637159)
chr1 (30-187)||(14498779-14498935)
chr1 (109-187)||(52753954-52754032)
chr1 (134-187)||(25017371-25017424)
chr1 (133-184)||(32379992-32380043)
chr1 (134-187)||(40864856-40864909)
chr1 (54-123)||(30054770-30054839)
chr1 (149-187)||(17127439-17127477)
chr1 (30-78)||(52754030-52754078)
[»] scaffold0178 (1 HSPs)
scaffold0178 (36-187)||(17627-17778)
[»] chr6 (4 HSPs)
chr6 (30-187)||(12180662-12180819)
chr6 (30-184)||(11970841-11970995)
chr6 (37-79)||(8035493-8035535)
chr6 (109-151)||(8035438-8035480)
[»] scaffold0002 (1 HSPs)
scaffold0002 (62-187)||(435492-435617)
[»] scaffold0007 (1 HSPs)
scaffold0007 (149-187)||(259918-259956)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 28846502 - 28846666
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28846502 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagttgccaaaccctgtcaataagctagtaaaataatcttataagtc 28846601  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgtccatc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28846602 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgtacatc 28846666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 38 - 187
Target Start/End: Original strand, 27190660 - 27190809
Alignment:
Q  38 gtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaa 137  Q
    ||||||||||||||| |||||||||||||||||||| ||||| |||||||  ||| || |||||| |||||||||||||||||||||||| ||| |||||    
T  27190660 gtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaagccatgtcaacaagctagtaaaataatcttataagcccgcgagaa 27190759  T
Q  138 agaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27190760 agaattgttacaaacaagatcaacgatgtgtggttcaatgacttgatgat 27190809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 13152682 - 13152531
Alignment:
Q  36 gggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgag 135  Q
    ||||||||||||||||| |||||||||||||||||||| ||||  |||||||  ||| || |||||| |||||||||||||||||||||||| |||||||    
T  13152682 gggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaagccatgtcaaaaagctagtaaaataatcttataagcccgtgag 13152583  T
Q  136 aaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  13152582 aaagaattgttaccaacatgatcaacgctgtgtggttcaatgacttgatgat 13152531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 14446714 - 14446870
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    ||||| |||| |||||||||||| |||||||||||||||||||| ||||| ||||||   |||  |||||||||||||||||||||||||||||||||||    
T  14446714 aatattgggtacaccaaagctattaccaacatcaacaaaagttggaagtccaccagtagtcaagtcctgtcaataagctagtaaaataatcttataagtc 14446813  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
     | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  14446814 tgcgagaaagaattgttacc-acaagatcaacgatttgtggttcaatgacttgatgat 14446870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 24333602 - 24333752
Alignment:
Q  37 ggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgaga 136  Q
    ||||||||||| |||| ||||||||||| |||||||| ||||| ||| |||  |||  | ||||||||||||||||||||||||||||||| ||||||||    
T  24333602 ggtgcaccaaaactattaccaacatcaataaaagttggaagtccaccggttgtcaagtcttgtcaataagctagtaaaataatcttataagcccgtgaga 24333701  T
Q  137 aagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  24333702 aagaattgttaccaacaagatcaacgatgtatgattcaatgactttatgat 24333752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 16532806 - 16532768
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgat 16532768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 9256355 - 9256427
Alignment:
Q  112 aaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||  ||||||||||||||   ||||| | |||||| ||||||||||| ||||||||||||||    
T  9256355 aaaataatcttataagcacgtgagaaagaatt---accaatatgatcaatgatgtgtggtttaatgacttgatgat 9256427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 9256307 - 9256345
Alignment:
Q  35 cgggtgcaccaaagctataaccaacatcaacaaaagttg 73  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9256307 cgggtgcaccaaagctattaccaacatcaacaaaagttg 9256345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 31944497 - 31944654
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| ||||||||  |||||||| |||||||| ||||||||||| ||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||      
T  31944497 aatagcgggtgcatgaaagctattaccaacattaacaaaagttggaagtccaccagttatcaagccctgccaataagctagtaaaataatcttataagct 31944596  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31944597 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 31944654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 4325387 - 4325450
Alignment:
Q  123 ataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4325387 ataagcccgtaagaaagaat-gttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 4325450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 12211401 - 12211363
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12211401 caacaagatcaacgatgtgtggttcaatgacttgatgat 12211363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 24104719 - 24104671
Alignment:
Q  36 gggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctacca 84  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  24104719 gggtgcaccaaagctatcaccaacatcaacaaaagttgaaagtccacca 24104671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 51379529 - 51379571
Alignment:
Q  37 ggtgcaccaaagctataaccaacatcaacaaaagttgtaagtc 79  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  51379529 ggtgcaccaaagctattaccaacatcaacaaaagttggaagtc 51379571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 24104659 - 24104597
Alignment:
Q  66 aaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagt 128  Q
    |||||||| ||||| |||||||  ||| | ||| |||||||||||||||| ||||||||||||    
T  24104659 aaaagttggaagtccaccagttatcaagctctgccaataagctagtaaaagaatcttataagt 24104597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 53693209 - 53693171
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  53693209 caacatgatcaacggtgtgtggttcaatgacttgatgat 53693171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 55464835 - 55464797
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  55464835 caacaagatcaacaatgtgtggttgaatgacttgatgat 55464797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 3857163 - 3857014
Alignment:
Q  37 ggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgaga 136  Q
    |||||||||||||||| || ||||||||||||||||| ||||| |||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  3857163 ggtgcaccaaagctattacgaacatcaacaaaagttggaagtccaccagttatcaagccctgtcaataagctagtaaaataatcttataagcccgtgaga 3857064  T
Q  137 aagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatga 186  Q
    || ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  3857063 aataattgttaccatcaagatcaacgatgtgtggttaaatgacttgatga 3857014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 51261867 - 51262017
Alignment:
Q  37 ggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgaga 136  Q
    |||||| ||||||||| |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||| | |||||  ||||| |    
T  51261867 ggtgcatcaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaaaccctgtcaataagctagtaaaataatataataagctcgtgaaa 51261966  T
Q  137 aagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  51261967 aagaattgttaccaacaagatcaacgaagtgtggtacaatgaattgatgat 51262017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 15667868 - 15668011
Alignment:
Q  44 caaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaatt 143  Q
    |||| |||| |||||||||||||||||||| ||||| || ||||  ||| |||| ||||||||| ||||||||||||||||||  || ||||||||||||    
T  15667868 caaacctattaccaacatcaacaaaagttggaagtccactagttatcaagccctatcaataagcaagtaaaataatcttataaacccatgagaaagaatt 15667967  T
Q  144 gttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  15667968 gttaccaacaagatcaaggatgtgtggttcaataacttgatgat 15668011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 43137127 - 43137165
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  43137127 caacaagatcaacgatgtatggttcaatgacttgatgat 43137165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 24908568 - 24908530
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  24908568 caacaagatcaacaatgtgtggttgaatgacttgatgat 24908530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 31989029 - 31989067
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  31989029 caacaagatcaacaatgtgtggttgaatgacttgatgat 31989067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 37382044 - 37382006
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  37382044 caacaagatcaacgatgtgtggttaaatgactcgatgat 37382006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 12539455 - 12539612
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||||  ||| || || |||||||||||||||| ||||||||||| |    
T  12539455 aatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagccttgccaataagctagtaaaagaatcttataagcc 12539554  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  12539555 cgtgagaaagaattgttaccaacaagatcaacaatgcgtggttcaatgacttgatgat 12539612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 34317761 - 34317604
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||| ||||||||||| |||||||||||||||||||| ||||| |||||||  ||| |  ||||||||||||||||||| |||||||||| ||    
T  34317761 aatagcgggtgaaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaagctttgtcaataagctagtaaaagaatcttataaatc 34317662  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34317661 catgagaaagaattgttaccaacaagatcaatgatgtgtggttcaatgacttgatgat 34317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 35649831 - 35649797
Alignment:
Q  153 aagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||| ||||||||||||||||||    
T  35649831 aagatcaacgatgtgttgttcaatgacttgatgat 35649797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 8785664 - 8785817
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||||||||||||||| |||||||||||||||||||| ||||| || ||||  ||||||| || ||||||||||||||||||||||||||| |    
T  8785664 aatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccactagttatcaaaccccgttaataagctagtaaaataatcttataag-c 8785762  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat 184  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8785763 aatgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat 8785817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 3055362 - 3055520
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaa-gttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagt 128  Q
    |||| |||||||||||||||||| | |||||||||||||  | |  ||||  |||||||  ||| || |||||||||||||||||||||||||||||||     
T  3055362 aatagcgggtgcaccaaagctattatcaacatcaacaaattggtagaagtaaaccagttatcaagccatgtcaataagctagtaaaataatcttataagc 3055461  T
Q  129 ccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3055462 ccgtgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgat 3055520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 11852602 - 11852753
Alignment:
Q  36 gggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgag 135  Q
    |||||||||||| |||| || |||||||||||||||   || || | |||||  |||  |||||||||||||||||||||||||||||||||||||||||    
T  11852602 gggtgcaccaaaactattactaacatcaacaaaagtgaaaaatccatcagttgtcaagtcctgtcaataagctagtaaaataatcttataagtccgtgag 11852701  T
Q  136 aaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  11852702 aaagaattattaccaacaagatgaaagatgtgtggttcaatgacttgatgat 11852753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 27169089 - 27168943
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||| ||||||||||| ||||||||||||||||| || ||||| |||||||  |||  | ||||||||||||||||||||||||||||||| |    
T  27169089 aatagcgggtgtaccaaagctattaccaacatcaacaaaagatggaagtccaccagttatcaagtcttgtcaataagctagtaaaataatcttataagcc 27168990  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaat 176  Q
    | ||||||| ||||||||| |||||||||||||||||||||||||||    
T  27168989 catgagaaataattgttacaaacaagatcaacgatgtgtggttcaat 27168943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 23244800 - 23244707
Alignment:
Q  94 ccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23244800 ccctgtcaataagctagtaaaataatcttataagccaatgagaaagaattgttaccaacaagatcaacgatgtgtcgttcaatgacttgatgat 23244707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 7e-51; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 43727877 - 43728034
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||||||||||||||| |||||||||||||||||||| ||||  |||||||  |||  | ||||||||||||||||||||||||||||||| |    
T  43727877 aatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaactcatgtcaataagctagtaaaataatcttataagcc 43727976  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
      |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43727977 tatgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgat 43728034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 9230282 - 9230439
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||||||||||||||| | |||||||||||||||||| || |  | |||||  ||| || ||||||||||||||||||||||||||||||| |    
T  9230282 aatagcgggtgcaccaaagctattatcaacatcaacaaaagttggaaatacatcagttatcaagccatgtcaataagctagtaaaataatcttataagcc 9230381  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||    
T  9230382 cgttagaaaaaattgttaccaacatggtcaacgatgtgtggttcaatgacttgatgat 9230439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 23804726 - 23804635
Alignment:
Q  96 ctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  23804726 ctgtcaataagctagtaaaataatcttataagtttgtgagaaagaatggttaccaacaagatcaacgatgtgtggttcaatgacttgttgat 23804635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 24276517 - 24276397
Alignment:
Q  35 cgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtt-tccaaaccctgtcaataagctagtaaaataatcttataagtccgtg 133  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || | || || |||||||||||||||| |||||||||||   |||     
T  24276517 cgggtgcaccaaagctataaccaacatcaacaaaagttggaagtccaccagttgtcaagactctatcaataagctagtaaattaatcttataacctcgtt 24276418  T
Q  134 agaaagaattgttaccaacaa 154  Q
    |||||||||||||||||||||    
T  24276417 agaaagaattgttaccaacaa 24276397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 23180109 - 23180022
Alignment:
Q  100 caataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  23180109 caataagctagtaaaataatcttataagctcgtgagaaataattgttaccaacaagatcaacgatgtgtgtttcaataacttgatgat 23180022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 5287949 - 5288070
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||| ||||||||||| |||| ||||||||||||||| ||||| ||| |||  |||| ||||||||||||||||||||||||||||| |||      
T  5287949 aatagcgggtgtaccaaagctattaccatcatcaacaaaagttggaagtccaccggttgtcaaatcctgtcaataagctagtaaaataatcttacaagct 5288048  T
Q  130 cgtgagaaagaattgttaccaa 151  Q
    |||||||||||| |||||||||    
T  5288049 cgtgagaaagaagtgttaccaa 5288070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 25024464 - 25024599
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| ||| |||||||||||||| |||| ||||||||||||||| ||||| |||| ||  ||| || ||| ||||||||||||||||||||||||||| |    
T  25024464 aatagcggatgcaccaaagctattaccagcatcaacaaaagttggaagtccaccaattgtcaatccatgttaataagctagtaaaataatcttataagcc 25024563  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatg 165  Q
     | ||||| |||||||||| || || ||||||||||    
T  25024564 ggcgagaaggaattgttactaataaaatcaacgatg 25024599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 8638598 - 8638652
Alignment:
Q  133 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  8638598 gagaaagaattgttaccaacaagatcaacgacgtgtggtttaattacttgatgat 8638652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 45197644 - 45197682
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  45197644 caacaagatcaacaatgtgtggttcaatgacttgatgat 45197682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 19399978 - 19400016
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  19399978 caacaagatcaacaatgtgtggttgaatgacttgatgat 19400016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 27387481 - 27387443
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  27387481 caacaagatcaacaatgtgtggttgaatgacttgatgat 27387443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 18375416 - 18375444
Alignment:
Q  159 aacgatgtgtggttcaatgacttgatgat 187  Q
    |||||||||||||||||||||||||||||    
T  18375416 aacgatgtgtggttcaatgacttgatgat 18375444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 48606898 - 48606749
Alignment:
Q  38 gtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaa 137  Q
    ||||||||||||||| ||||| |||||||||||||| ||||| || ||||  |||||||||||||||  ||||||||||||||||||| || |||| |||    
T  48606898 gtgcaccaaagctattaccaaaatcaacaaaagttggaagtccactagttatcaaaccctgtcaatattctagtaaaataatcttatatgttcgtgggaa 48606799  T
Q  138 agaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48606798 agaattgctaccaacaagatcaacgatgtgtggttcaatgacttgatgat 48606749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 30559299 - 30559142
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||||||||||||||| |||||||||||||||||||| ||||| ||| |||  ||| |  ||||||||||||||||||||| |||||||||      
T  30559299 aatagcgggtgcaccaaagctattaccaacatcaacaaaagttgaaagtccaccggttgtcaagctttgtcaataagctagtaaaatattcttataagct 30559200  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  30559199 cgcgagaaagaattgttatcaacaagatcaacgatgtgtggttctatgacttgatgat 30559142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 9637003 - 9637159
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| ||||||||||||||| || || ||||||||||||||||| ||||| ||| |||   || ||||| ||||||||||||||| |||||||||||||     
T  9637003 aatagcgggtgcaccaaagccattactaacatcaacaaaagttgaaagtccaccggttataaagccctgccaataagctagtaaa-taatcttataagtt 9637101  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  9637102 cgtgagaaataattgttaccaacaagatcaatgatgcgtggttcaatgacttgatgat 9637159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 14498779 - 14498935
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||| ||||||||||| | |||||||||||||||||| ||||  ||||||   ||| || |||||||||||||||||||||||||||||||      
T  14498779 aatagcgggtgtaccaaagctattatcaacatcaacaaaagttggaagtacaccagtcatcaagccatgtcaataagctagtaaaataatcttataagct 14498878  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||    
T  14498879 cgtgagaaagatttgttaccaacatgatcaacgatttgtgg-tcaatgacttgatgat 14498935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 52754032 - 52753954
Alignment:
Q  109 agtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  52754032 agtaaaataatcttataagcctgtgagaaagaattattaccaacatgatcaacgatgtgtggttcaatgacttgatgat 52753954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 25017371 - 25017424
Alignment:
Q  134 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25017371 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 25017424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 32380043 - 32379992
Alignment:
Q  133 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32380043 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat 32379992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 40864909 - 40864856
Alignment:
Q  134 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40864909 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 40864856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 30054770 - 30054839
Alignment:
Q  54 accaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatctta 123  Q
    |||||||||||||||||||| ||||| ||| |||  ||| ||||  ||||||||||||||||||||||||    
T  30054770 accaacatcaacaaaagttggaagtccaccggttgtcaagccctaccaataagctagtaaaataatctta 30054839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 17127439 - 17127477
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  17127439 caacaagatcaacaatgtgtggttgaatgacttgatgat 17127477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 52754078 - 52754030
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagt 78  Q
    |||| |||||||||||||||||| | |||||| ||||||||||| ||||    
T  52754078 aatagcgggtgcaccaaagctattatcaacattaacaaaagttgaaagt 52754030  T

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Target: scaffold0178 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 17627 - 17778
Alignment:
Q  36 gggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgag 135  Q
    |||||||||||| |||| |||||||||||||||||||| ||||| |||||||  ||| | ||||||||||||||||||||||||||||||||  | | ||    
T  17627 gggtgcaccaaaactattaccaacatcaacaaaagttggaagtccaccagttatcaatctctgtcaataagctagtaaaataatcttataagctcattag 17726  T
Q  136 aaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  17727 aaataattgttatcaacaagatcaacgatgtgtggttcaatgacttgatgat 17778  T

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Target: chr6 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 12180819 - 12180662
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| ||||||| |||||| ||| || ||||||||||||||||| ||||| | |||||  ||| ||||||||||||||| |||||||||||||||||| |    
T  12180819 aatagcgggtgcgccaaagttattacaaacatcaacaaaagttgaaagtccatcagttatcaagccctgtcaataagctggtaaaataatcttataagcc 12180720  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  12180719 cgtgagaaaaaattgttaccaacaagatcaacattgtgtggttcaatgacttgatgat 12180662  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 11970841 - 11970995
Alignment:
Q  30 aatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtc 129  Q
    |||| |||||||| ||||||||| |||||||||| |||||||   ||||| || ||||  |||||||  || |||| ||||||||||||| ||||||||     
T  11970841 aatagcgggtgcagcaaagctattaccaacatcagcaaaagtatgaagtccactagttgtcaaaccccatctataatctagtaaaataattttataagta 11970940  T
Q  130 cgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat 184  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11970941 tgtgagaaagaattgttaccaataagatcaacgatgtgtggttcaatgacttgat 11970995  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 8035535 - 8035493
Alignment:
Q  37 ggtgcaccaaagctataaccaacatcaacaaaagttgtaagtc 79  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  8035535 ggtgcaccaaagctattaccaacatcaacaaaagttggaagtc 8035493  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 8035480 - 8035438
Alignment:
Q  109 agtaaaataatcttataagtccgtgagaaagaattgttaccaa 151  Q
    ||||||||||||||||| |  ||||||||||||||||||||||    
T  8035480 agtaaaataatcttatatgctcgtgagaaagaattgttaccaa 8035438  T

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Target: scaffold0002 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 435617 - 435492
Alignment:
Q  62 caacaaaagttgtaagtctaccagtttccaaaccctgtcaataagctagtaaaataatcttataagtccgtgagaaagaattgttaccaacaagatcaac 161  Q
    |||||||||||  ||||| |||||||  ||| || |||||||||| ||||||||||||||||||||  ||||||||| |||||||||||||||||||||     
T  435617 caacaaaagttcgaagtccaccagttgtcaacccatgtcaataagttagtaaaataatcttataagctcgtgagaaaaaattgttaccaacaagatcaat 435518  T
Q  162 gatgtgtggttcaatgacttgatgat 187  Q
     |||||||| ||||||||||||||||    
T  435517 aatgtgtggctcaatgacttgatgat 435492  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 259918 - 259956
Alignment:
Q  149 caacaagatcaacgatgtgtggttcaatgacttgatgat 187  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  259918 caacaagatcaacaatgagtggttcaatgacttgatgat 259956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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