View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_27 (Length: 380)
Name: NF6871A_low_27
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 45099100 - 45099455
Alignment:
| Q |
20 |
catcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttccctattcatctgttgagcagtcatgtaaacattttcagg |
119 |
Q |
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| T |
45099100 |
catcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttccctattcatctgttgagcagtcatgtaaacattttcagg |
45099199 |
T |
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| Q |
120 |
tgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcagga |
219 |
Q |
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| T |
45099200 |
cgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcagga |
45099299 |
T |
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| Q |
220 |
atccaagttctccaaagggtatcattaaaaggtgttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctat |
319 |
Q |
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| T |
45099300 |
atccaagttctccaaagggtgtcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctat |
45099399 |
T |
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| Q |
320 |
actcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
375 |
Q |
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| T |
45099400 |
actcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
45099455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 79 - 299
Target Start/End: Complemental strand, 17348858 - 17348638
Alignment:
| Q |
79 |
tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat |
178 |
Q |
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| T |
17348858 |
tccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccctttctgataatctggtgtgtgagtgctcactacag |
17348759 |
T |
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| Q |
179 |
gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggtgttattttcatacctcctacattaat |
278 |
Q |
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|||||||| ||||||||||||| | |||||| |||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| |||||||| |
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| T |
17348758 |
ccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcattaaaaggagttaatttttcacctccaacattaat |
17348659 |
T |
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| Q |
279 |
cctatgaacagtttccaaaac |
299 |
Q |
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| T |
17348658 |
cctatgaatagtttctaaaac |
17348638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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