View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_3 (Length: 516)
Name: NF6871A_low_3
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 516
Target Start/End: Complemental strand, 44912816 - 44912310
Alignment:
| Q |
9 |
aatgcgaactaatatatttttcggcgcatactaaagaagtaaagattattagggaaatatttttgtggattcatgatgacaacacaagtagcagcactat |
108 |
Q |
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| T |
44912816 |
aatgcgaactaatatatttttcggcgcatactaaagaagtaaagattattagggaaatatttttgtggattcatgatgacaacccaagtagcagcactat |
44912717 |
T |
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| Q |
109 |
agaaaaagccaaaatgacagagtcaacagctcgatcaaaaccagaggggagacaggacttatttgtcac-gactcacaaaatgtcaaattttattctcat |
207 |
Q |
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| T |
44912716 |
agaaaaagccaaaatgacag--tcaacagctcgatcaaaaccagaggggagacaggacttatttgtcacagactctcaaaatgtcaaattttattctcat |
44912619 |
T |
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| Q |
208 |
ccaaacaatttcctgtaagcacgaaaccaagcagtcgagtatattttagaccctaaacaacaaatccattctaccataattttaccaaaatgttcaatca |
307 |
Q |
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| T |
44912618 |
ccaaacaatttcctgtaagcacgaaaccaagcagtcgagtatattttagaccctaaacaacaaatccattctaccataattttaccgaaatgttcaatca |
44912519 |
T |
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| Q |
308 |
aatagatcttactatctgaatgcttctctgatcttagtttatattcaactactcacagcccctttagtcgttcaggaagacaggaaccatttcatctttt |
407 |
Q |
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| T |
44912518 |
aatagatcttactatctgaatgcttctctgatcttagtttatattcaactactcacagcccctttagtcgttcaggaagacaggaaccatttcatctttt |
44912419 |
T |
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| Q |
408 |
gaaaaaagcaattcaatcattttaatatatttataaatcatcagatagtctccaacagtcaaacctaagaaacctatagatatataacttctatcaaatt |
507 |
Q |
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| T |
44912418 |
gaaaaaagcaattcaatcattttaatatatttataaatgatcagatagtctccaacagtcaaacctaagaaacctatagatatataacttctatcaaatt |
44912319 |
T |
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| Q |
508 |
tgtttttga |
516 |
Q |
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| T |
44912318 |
tgtttttga |
44912310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 40 - 336
Target Start/End: Original strand, 33376691 - 33376974
Alignment:
| Q |
40 |
taaagaagtaaagattattagggaaatatttttgtggattcatgatgacaacacaagtagcagcactatagaaaaagccaaaatgacagagtcaacagct |
139 |
Q |
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| T |
33376691 |
taaagaagtaaagattataagggaaagatttttgtggattcatgatgacaacccaagttgcagcaccatagaaaaagacaaaatgacaaagtcg------ |
33376784 |
T |
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| Q |
140 |
cgatcaaaaccagaggggagacaggacttatttgtcacgactcacaaaatgtcaaattttattctcatccaaacaatttcctgtaagcacgaaaccaagc |
239 |
Q |
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||||||||| |||||||| |||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33376785 |
---tcaaaaccaaaggggagaaaggacttatttgtcgcaaatcacaaaattccaaattttattctcatccaaacaatttcctgtaagcacgaaaccaagc |
33376881 |
T |
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| Q |
240 |
agtcgagtatattttagaccctaaacaacaaatccattctaccataat-----tttaccaaaatgttcaatcaaatagatcttactatctgaatgcttct |
334 |
Q |
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| T |
33376882 |
agtcaa---------agaccctaaaaaacaagtccattctaccataattttactttaccaaaatgttcaatcaaatagattttactatctgaatgcttct |
33376972 |
T |
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