View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_32 (Length: 368)
Name: NF6871A_low_32
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_32 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 9805007 - 9805341
Alignment:
| Q |
19 |
acatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttatactcttcaaattccccatcttacttttggggaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9805007 |
acatcatactatgtaataaatacatggattttattttaatttattatccacacatggatttcttatactcttcaaattccccatcttacctttggggaag |
9805106 |
T |
|
| Q |
119 |
agtcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgta |
218 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |
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| T |
9805107 |
agtcttcctcctcatcaccagtgcttttcattttgttcaacaagaattccttttccctttgatgcattcctatgtacaaaaatttaatataaaatgtgta |
9805206 |
T |
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| Q |
219 |
ctagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaaaatcacaatataccttgattctcccttttcgcgagtacat |
318 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9805207 |
ctagaagtaaatagaaaataacaaatacaagtacatattttaataaccgaataaaaaaaaaatcacaatataccttgattctcccttttcgcgagtacat |
9805306 |
T |
|
| Q |
319 |
gaaataccttccatcttatcctgttcaatgatgtc |
353 |
Q |
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| T |
9805307 |
gaaataccttccatcttgtcctgttcaatgatgtc |
9805341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 9817932 - 9818211
Alignment:
| Q |
19 |
acatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttat--actcttcaaattccccatcttacttttgggga |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
9817932 |
acatcatactatgtgataaatacatggattttattttaatttattatctacacatggatttcttttctactcttcaaattccccatcttacctttgggga |
9818031 |
T |
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| Q |
117 |
agagtcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtg |
216 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
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| T |
9818032 |
agagtcttcctcctcatcactagtgcttttcattttgttcaacaagaattccttttccctttgatgcattcttgtgtacaaaaatttaatataaattgtg |
9818131 |
T |
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| Q |
217 |
tactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaa--aaatcacaatatacctt |
294 |
Q |
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| T |
9818132 |
tactagaagtaaatagaaaataacaaatacaagtacataatttaataaccgtataaaaaaaataaatcacaatatacctt |
9818211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 9806786 - 9806455
Alignment:
| Q |
19 |
acatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttat---actcttcaaattccccatcttacttttgggg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| | | ||| | ||||||| ||||||||||||||||| |||||||| ||| |
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| T |
9806786 |
acatcatactatgtaataaatacatggattttattttattttattgggtagacatgaacttcttattctactcttcaaattccccaccttactttcggg- |
9806688 |
T |
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| Q |
116 |
aagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataa |
210 |
Q |
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|| ||||||||| ||| || | ||| || ||||||||||||||||| ||||||||||||||| ||||||||||||| || |||| |
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| T |
9806687 |
aatagtcttcctcctcttctatagtggcctcctcttcattttgttcaacaataattccttttccctt------------gtgtacaaaaattaaatataa |
9806600 |
T |
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| Q |
211 |
aatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa--aatcacaatataccttgattctcccttttc |
308 |
Q |
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|||||||| ||||| |||||| |||||||||| |||||||||||||| ||||||| | ||||| ||| |||||||||||||||||||||||||||||| |
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| T |
9806599 |
aatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaataaatcacaatataccttgattctcccttttc |
9806500 |
T |
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| Q |
309 |
gcgagtacatgaaataccttccatcttatcctgttcaatgatgtc |
353 |
Q |
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| ||| || |||||||||||||||||| || |||||||||||||| |
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| T |
9806499 |
gtgagcacgtgaaataccttccatcttgtcttgttcaatgatgtc |
9806455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 11941 - 12285
Alignment:
| Q |
19 |
acatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttat---actcttcaaattccccatcttacttttgggg |
115 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||| ||| |
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| T |
11941 |
acatcatactatgtaataaatacatgaattttattttattttattatgtacacatagatttcttattctactcttcaaattccccatcttactttaggg- |
12039 |
T |
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| Q |
116 |
aagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataa |
210 |
Q |
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|||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |||||| | |||||| |||||| ||||||||| |||| |
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| T |
12040 |
aagagtcttcctcgttatcactagtggcatccttttcattttgttcaacaagaattccttctcccttcgctgcattatcgtgtaccaaaatttaatataa |
12139 |
T |
|
| Q |
211 |
aatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcg |
309 |
Q |
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|||| |||||||||||||||| |||||||||| | ||||||||| || ||||||| | ||||| || ||||||||| |||| ||||||| |||||||| |
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| T |
12140 |
aatg-gtactagaagtaaatataaaataacaaacataagtacataattgaataaccaactaaaaaaataaatcacaaaatacgttgattcccccttttca |
12238 |
T |
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| Q |
310 |
cgagtacatgaaataccttccatcttatcctgttcaatgatgtccat |
356 |
Q |
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||||||||| ||||||||||||||| || || |||||||||||||| |
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| T |
12239 |
tgagtacatggaataccttccatcttgtcatgatcaatgatgtccat |
12285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
| Q |
237 |
taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt |
328 |
Q |
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||||||| | ||||| |||||| ||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |||||||||| |||||||| |
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| T |
2371052 |
taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt |
2371144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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