View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_33 (Length: 364)
Name: NF6871A_low_33
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 6 - 350
Target Start/End: Complemental strand, 5678635 - 5678289
Alignment:
| Q |
6 |
aggtccttgagcctatactataactgactcattaatctttttctgcttcatttatagtgaggtagaaatctttctgtacttgccatggtggatcgtggtc |
105 |
Q |
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| T |
5678635 |
aggtccttgagcctatactataactgactcattaatctttttctgcttcatttatagtgaggtagaaatctttctgtacttgccatggtggatcgtggtc |
5678536 |
T |
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| Q |
106 |
tagacaaaactacaacatctgctagtgacttgtctgtgaagaagcaagagcttctatctagtgccgtgaaaagaacaagtgactggtata--nnnnnnna |
203 |
Q |
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| T |
5678535 |
tagacaaaactacaacatctgctagtgacttgtctgtgaagaagcaagagcttctatctagtgccatgaaaagaacaagtgactggtatattttttttta |
5678436 |
T |
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| Q |
204 |
tgtttatgtatatatatgtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaattagttg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5678435 |
tgtttatgtatatatatgtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttg |
5678336 |
T |
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| Q |
304 |
tattgcttaattataggattttttctcaggagattccaagtgatgtc |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678335 |
tattgcttaattataggattttttctcaggagattccaagtgatgtc |
5678289 |
T |
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