View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_4 (Length: 480)

Name: NF6871A_low_4
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_4
NF6871A_low_4
[»] chr5 (13 HSPs)
chr5 (1-463)||(37704996-37705459)
chr5 (217-418)||(37437914-37438116)
chr5 (310-416)||(37700646-37700753)
chr5 (121-198)||(1629760-1629837)
chr5 (16-194)||(13953440-13953616)
chr5 (99-215)||(1629683-1629799)
chr5 (99-215)||(29532047-29532161)
chr5 (101-142)||(2143379-2143420)
chr5 (109-194)||(30384213-30384297)
chr5 (109-196)||(37704830-37704917)
chr5 (100-163)||(41232901-41232964)
chr5 (99-195)||(38458805-38458899)
chr5 (119-215)||(29531855-29531950)
[»] chr2 (13 HSPs)
chr2 (19-213)||(8198565-8198759)
chr2 (19-213)||(8203325-8203519)
chr2 (16-194)||(4558828-4559007)
chr2 (130-213)||(45385838-45385921)
chr2 (99-213)||(4923428-4923542)
chr2 (234-301)||(8265959-8266027)
chr2 (99-194)||(42053964-42054059)
chr2 (105-194)||(3289442-3289531)
chr2 (145-211)||(4558680-4558745)
chr2 (136-194)||(8198419-8198477)
chr2 (136-194)||(8203179-8203237)
chr2 (140-215)||(32546464-32546538)
chr2 (101-161)||(28358958-28359018)
[»] chr7 (19 HSPs)
chr7 (99-213)||(41331325-41331439)
chr7 (102-195)||(30551947-30552040)
chr7 (102-195)||(6589558-6589651)
chr7 (119-198)||(12422044-12422123)
chr7 (108-215)||(32804629-32804736)
chr7 (16-213)||(18128434-18128632)
chr7 (106-194)||(1532197-1532285)
chr7 (17-205)||(20389633-20389822)
chr7 (99-194)||(28003341-28003434)
chr7 (101-194)||(5755594-5755685)
chr7 (111-215)||(12422352-12422455)
chr7 (15-215)||(21920965-21921164)
chr7 (115-180)||(32918529-32918595)
chr7 (102-163)||(1532441-1532501)
chr7 (119-195)||(6586862-6586938)
chr7 (266-301)||(21595127-21595162)
chr7 (114-193)||(48447283-48447362)
chr7 (100-157)||(5762696-5762753)
chr7 (109-213)||(45477966-45478070)
[»] chr4 (22 HSPs)
chr4 (236-408)||(16840622-16840796)
chr4 (99-213)||(22519807-22519921)
chr4 (105-194)||(48194394-48194483)
chr4 (121-213)||(33617920-33618010)
chr4 (106-194)||(22889586-22889674)
chr4 (106-194)||(22941250-22941338)
chr4 (119-194)||(53769786-53769861)
chr4 (109-215)||(2323266-2323372)
chr4 (126-200)||(42676809-42676883)
chr4 (6-74)||(22519450-22519518)
chr4 (6-194)||(31095188-31095377)
chr4 (109-192)||(34013780-34013861)
chr4 (114-189)||(22519373-22519448)
chr4 (100-195)||(34717567-34717660)
chr4 (99-150)||(40070309-40070360)
chr4 (105-194)||(20141745-20141835)
chr4 (109-163)||(31095078-31095131)
chr4 (99-140)||(22519313-22519354)
chr4 (102-163)||(48194179-48194239)
chr4 (126-198)||(22519774-22519846)
chr4 (114-194)||(31095106-31095186)
chr4 (109-173)||(55368780-55368844)
[»] scaffold0591 (1 HSPs)
scaffold0591 (77-215)||(3866-4003)
[»] chr8 (14 HSPs)
chr8 (108-194)||(2277209-2277295)
chr8 (115-195)||(27532989-27533069)
chr8 (99-178)||(37064689-37064768)
chr8 (111-213)||(15907689-15907790)
chr8 (99-213)||(15907944-15908058)
chr8 (131-213)||(12807666-12807748)
chr8 (102-198)||(32566875-32566969)
chr8 (108-196)||(2967707-2967794)
chr8 (99-194)||(3806998-3807091)
chr8 (108-178)||(45445141-45445210)
chr8 (125-217)||(41123-41216)
chr8 (121-166)||(32566724-32566769)
chr8 (15-195)||(2510015-2510190)
chr8 (115-191)||(3806856-3806932)
[»] chr6 (11 HSPs)
chr6 (6-200)||(16419591-16419788)
chr6 (102-213)||(12458392-12458504)
chr6 (56-194)||(33547750-33547889)
chr6 (99-195)||(10544282-10544376)
chr6 (107-163)||(7202300-7202356)
chr6 (14-91)||(17411193-17411270)
chr6 (99-196)||(31314513-31314609)
chr6 (16-86)||(196111-196181)
chr6 (121-194)||(196063-196135)
chr6 (99-140)||(33547744-33547785)
chr6 (114-194)||(33547811-33547890)
[»] chr1 (20 HSPs)
chr1 (102-195)||(16554303-16554396)
chr1 (105-194)||(18470189-18470279)
chr1 (99-194)||(802251-802346)
chr1 (106-213)||(12656368-12656474)
chr1 (6-194)||(363615-363804)
chr1 (108-194)||(16026108-16026194)
chr1 (19-215)||(11016877-11017075)
chr1 (99-194)||(46530163-46530258)
chr1 (6-193)||(47726506-47726693)
chr1 (6-193)||(47747812-47747999)
chr1 (106-163)||(48130213-48130268)
chr1 (111-200)||(48130428-48130516)
chr1 (114-213)||(363806-363906)
chr1 (99-178)||(26706353-26706432)
chr1 (111-213)||(46530411-46530517)
chr1 (235-301)||(2125101-2125168)
chr1 (102-163)||(16026346-16026406)
chr1 (106-163)||(18470439-18470495)
chr1 (16-89)||(29954870-29954943)
chr1 (99-215)||(23808083-23808199)
[»] chr3 (9 HSPs)
chr3 (105-194)||(51265894-51265984)
chr3 (6-163)||(44291025-44291182)
chr3 (99-195)||(44291413-44291509)
chr3 (109-213)||(48200367-48200471)
chr3 (119-213)||(33291582-33291676)
chr3 (102-163)||(51265679-51265739)
chr3 (112-213)||(1662257-1662357)
chr3 (99-135)||(9343215-9343251)
chr3 (121-213)||(14747077-14747167)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 37704996 - 37705459
Alignment:
Q  1 gtaactttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnntt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||    
T  37704996 gtaactttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttgttacagttaaatagcttagaggacctaattggtacgaaaaaaatt 37705095  T
Q  101 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  37705096 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaatcttaaatgaccaatttcttacaactaaataacttaaaagactt 37705195  T
Q  201 atggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37705196 atggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataatttcttcaaagtttgtt 37705295  T
Q  301 acagcacaaaagaaaatgcattgagcatat-aaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccaccttt 399  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  37705296 acagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgccatcggatatcgatactcaactcgtgggttctacggtagaccaccttt 37705395  T
Q  400 ataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgattgatgt 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705396 ataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgattgatgt 37705459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 217 - 418
Target Start/End: Original strand, 37437914 - 37438116
Alignment:
Q  217 tttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaa 316  Q
    ||||||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| || ||| |||||| |||||||    
T  37437914 tttattttatgtgttttttttttctatggttcttaactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaa 37438013  T
Q  317 tgcattgagcatat-aaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcat 415  Q
    |||| ||||||||| |||||||||||||| |  ||||||  |||||||||||||||||  |||||||||| ||| |||||||||||||  ||||||||||    
T  37438014 tgcactgagcatataaaaagaaaaagtattaagtgtcatatgatatcgatactctactattgagttctactgtaaaccacctttataagcggttcatcat 37438113  T
Q  416 gga 418  Q
    |||    
T  37438114 gga 37438116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 416
Target Start/End: Original strand, 37700646 - 37700753
Alignment:
Q  310 aagaaaatgcattgagcatataaaa-gaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggt 408  Q
    ||||||||||| |||||| |||||| |||||  ||| |  ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  37700646 aagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatattgatactctactcgtgagttctaccgtagaccacttttataagtggt 37700745  T
Q  409 tcatcatg 416  Q
    ||||||||    
T  37700746 tcatcatg 37700753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 1629837 - 1629760
Alignment:
Q  121 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    |||| ||||||||||||| ||| || |||| |||||||||||| |||| |||| |||||| ||| |||||||||||||    
T  1629837 ttaaataacttaaaggacttaattgctacggaaaaaacttaaaggatcgatttgttacaattaattaacttaaaagac 1629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 13953440 - 13953616
Alignment:
Q  16 gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgt 115  Q
    ||||||||| || ||||| | |||||||||||| || || ||||  ||||||| |||| | ||| |||||||||||       ||||| ||| |||||||    
T  13953440 gaataacttacatttttagg-tctgaaatcccttaaatttttacgattaaataacttaaaagacgtaattggtacggaaaaacttaaaagacaaacttgt 13953538  T
Q  116 tataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    || |||||||||||||||| ||| |||| |||| | ||||||||||||  | |||||| ||| || |||| ||||||||    
T  13953539 tacaattaattaacttaaatgacttaagcggtatg-aaaaaacttaaaaaaccaatttattataattaaacaacttaaa 13953616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 1629799 - 1629683
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    |||||||| | | |||||| |||||||||||||||| ||||||| | ||||  ||||   |||||  |  ||||| |||||| ||||||||||||| |||    
T  1629799 ttaaaggatcgatttgttacaattaattaacttaaaagacctaatttgtacagaaaatttttaaagaacgaatttattacaattaaataacttaaaggac 1629700  T
Q  199 ttatggtgtaatttaac 215  Q
    || ||||||||||||||    
T  1629699 ttttggtgtaatttaac 1629683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 29532047 - 29532161
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    ||||| ||||||||| ||| | ||||||||| ||||| | ||||||| |||| |||||| ||||| | ||||||| |||||| | |||||||| ||||||    
T  29532047 ttaaatgaccaactttttacagttaattaacataaagaagctaagtgatacg-aaaaaatttaaaggttcaatttgttacaattgaataactt-aaagac 29532144  T
Q  199 ttatggtgtaatttaac 215  Q
     |||| |||||||||||    
T  29532145 atatgatgtaatttaac 29532161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 2143379 - 2143420
Alignment:
Q  101 aaaggaccaacttgttataattaattaacttaaaggacctaa 142  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  2143379 aaaggactaacttgttacaattaattaacttaaaggacctaa 2143420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 30384297 - 30384213
Alignment:
Q  109 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||| |||||| ||||||||| ||| |||||  |||| |||||||||||| ||  ||||| |||||| |||||||||||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacg-aaaaaacttaaaagacaaatttgttacaattaaataacttaaa 30384213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 37704917 - 37704830
Alignment:
Q  109 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 196  Q
    |||||||||||||||| ||||||||| |||  ||||| |||| ||||| ||||||  | | |||| ||| || |||||||||||||||    
T  37704917 aacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaag 37704830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 41232964 - 41232901
Alignment:
Q  100 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    |||| ||||||||| ||| |||||||| |||||||||| ||||||||||   ||||||||||||    
T  41232964 taaaagaccaacttattacaattaattgacttaaaggatctaagtggtatcaaaaaaacttaaa 41232901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 38458805 - 38458899
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    ||||| ||| ||||| ||| ||| || ||||||||| ||  ||||||||||| ||||||||||||  |  ||||| |||||| ||||||||||||||    
T  38458805 ttaaatgactaacttattacaataaaataacttaaaagatataagtggtacgaaaaaaacttaaa--actaatttattacaattaaataacttaaaa 38458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 29531950 - 29531855
Alignment:
Q  119 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 215  Q
    |||||| ||||||||| ||| ||| || |||| |||||||||||| ||  ||||| |||||| ||||||||||||| ||| | |  |||||||||||    
T  29531950 aattaaataacttaaatgacgtaaatgatacg-aaaaaacttaaaggactaatttattacaattaaataacttaaatgacatctcatgtaatttaac 29531855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 8198565 - 8198759
Alignment:
Q  19 taacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgtta 117  Q
    |||||| || |||||||||||||||||||  || || |||| |||||||| |||| |||||||||||||||||        ||||||| ||||||| |||    
T  8198565 taacttacatttttaagatctgaaatcccctaaattgttacggttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttatta 8198664  T
Q  118 taattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
     ||||||||| |||||||||||||||||||||| |||||||||||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8198665 caattaattatcttaaaggacctaagtggtacggaaaaaacttaaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8198759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 8203325 - 8203519
Alignment:
Q  19 taacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgtta 117  Q
    |||||| || |||||||||||||||||||  || || |||| |||||||| |||| |||||||||||||||||        ||||||| ||||||| |||    
T  8203325 taacttacatttttaagatctgaaatcccctaaattgttacggttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttatta 8203424  T
Q  118 taattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
     ||||||||| |||||||||||||||||||||| |||||||||||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8203425 caattaattatcttaaaggacctaagtggtacggaaaaaacttaaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8203519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 4558828 - 4559007
Alignment:
Q  16 gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttg 114  Q
    |||||||||||| ||||||||||| |||| |||||| |  |||| ||||||||||||| |||||||||||||||| |       |||||||| |||||||    
T  4558828 gaataacttgcatttttaagatctaaaatacctcaaatagttacggttaaatagcttaaaggacctaattggtacagacaaaacttaaaggaacaacttg 4558927  T
Q  115 ttataattaattaacttaaaggacctaagtggta-cgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||| ||||||||||| ||||| |||||||| ||| |  |||||||||||| ||||||||| |||||| |||||||||||||    
T  4558928 ttacaattaattaacataaagtacctaagttgtaccaaaaaaaacttaaa-gatcaatttattacaattaaataacttaaa 4559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 45385921 - 45385838
Alignment:
Q  130 ttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
    ||||||||| ||||||||||| |||||||||||| |  |||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  45385921 ttaaaggacgtaagtggtacgaaaaaaacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaattta 45385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 4923542 - 4923428
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    ||||||||  ||||| ||| |||| |||||| ||||  |||||| ||||||| ||||||| |||||||||||||| ||| || |||| ||||||| ||||    
T  4923542 ttaaaggattaacttattacaatttattaacgtaaaaaacctaaatggtacggaaaaaacataaatgatcaatttattataattaaaaaacttaagagac 4923443  T
Q  199 ttatggtgtaattta 213  Q
     |  |||||||||||    
T  4923442 atccggtgtaattta 4923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 8266027 - 8265959
Alignment:
Q  234 ttttttgtatggttcttaactaaactacaaa-aatttctttaaatttataattttttcaaagtttgtta 301  Q
    ||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  8266027 tttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgtta 8265959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 42054059 - 42053964
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||| ||||||||| ||||||  ||||||||| ||||||||| ||   | |||||||||| ||| || || ||| ||||||||||||||||    
T  42054059 ttaaaggactaacttgttaaaattaaacaacttaaagaacctaagtgatataaacaaaacttaaaggattaacttattataactaaataacttaaa 42053964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 3289442 - 3289531
Alignment:
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||| |||||||| | ||||| ||  |||||| |||  |||||||||||| || |||||| |||||| ||||||| |||||    
T  3289442 gaccaacttgttacaattaattcaattaaaagatttaagtgatacaaaaaaaacttaaaagaccaatttattacaattaaataatttaaa 3289531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 4558745 - 4558680
Alignment:
Q  145 ggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 211  Q
    |||||| |||||||||||| || |||||| |||||| |||||||||||| ||| |||| ||||||||    
T  4558745 ggtacgaaaaaaacttaaa-gaccaatttattacaattaaataacttaagagaattatcgtgtaatt 4558680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 8198477 - 8198419
Alignment:
Q  136 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8198477 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 8203237 - 8203179
Alignment:
Q  136 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8203237 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 32546464 - 32546538
Alignment:
Q  140 taagtggtacgtaaaa-aacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 215  Q
    ||||||||||| |||| |||||||||||||||||| |||| | |||| ||||||||  || | ||||||||||||||    
T  32546464 taagtggtacgaaaaataacttaaatgatcaatttattacgattaaaaaacttaaa--acctctggtgtaatttaac 32546538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 28358958 - 28359018
Alignment:
Q  101 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaactta 161  Q
    ||||||||||| ||||| | ||||||||||||||||| |||| || |||| | ||||||||    
T  28358958 aaaggaccaacctgttacatttaattaacttaaaggaactaattgatacgaacaaaactta 28359018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 41331325 - 41331439
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    |||||| ||||||||||||||||| ||||||||||| || ||| ||||||||  ||||||||||||||||||||| |||||| ||||||||||||| |||    
T  41331325 ttaaagaaccaacttgttataatttattaacttaaatgagctaggtggtacgagaaaaacttaaatgatcaatttattacaattaaataacttaaatgac 41331424  T
Q  199 ttatggtgtaattta 213  Q
    ||||| | |||||||    
T  41331425 ttatgatataattta 41331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 30551947 - 30552040
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  30551947 aaggaccaacttgttacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 30552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 6589558 - 6589651
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||||||||  |||||||||||| ||||||||| |||||| ||||| ||||||||    
T  6589558 aaggaccaacttattacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggatcaatttattacaattaaattacttaaaa 6589651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 12422123 - 12422044
Alignment:
Q  119 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||| | |||||||||||||||    
T  12422123 aattaatttacttaaaggacctaagtggtatgaaaaaaacttaaatgaccaatttattacaatttaataacttaaaagac 12422044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 32804629 - 32804736
Alignment:
Q  108 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 207  Q
    |||||||||  |||||||||||||||| ||| ||||| ||| | ||||||| |||| ||||||||| |||||| |||||| | |||||||||| ||||||    
T  32804629 caacttgttgcaattaattaacttaaatgacttaagttgtatgaaaaaaacctaaaagatcaatttattacaattaaatatcctaaaagacttgtggtgt 32804728  T
Q  208 aatttaac 215  Q
    ||||||||    
T  32804729 aatttaac 32804736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 18128434 - 18128632
Alignment:
Q  16 gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttg 114  Q
    ||||||||| || |||||||||||||||| |  ||| || |||  |||||||| |||| |||| |||||| |||||        |||||| ||||||||     
T  18128434 gaataacttacatttttaagatctgaaattcgccaaattgttatggttaaataacttaaaggatctaattcgtacgaaaaaaaattaaagcaccaactta 18128533  T
Q  115 ttataattaattaacttaaaggacctaagtggtacgtaaaaaactt-aaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
    ||| ||||||||||||||||| |||||||| ||||| ||||||||| ||| || |||||| |||||  ||||||| ||||| ||| ||||||||||||||    
T  18128534 ttacaattaattaacttaaagaacctaagtagtacg-aaaaaacttaaaaggaccaatttattacatttaaataatttaaaggacctatggtgtaattta 18128632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 1532285 - 1532197
Alignment:
Q  106 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||||||||||||| |||| |||||||||||||||||| |||||  ||||||  ||||||||||| || |||||| |||||||||||||    
T  1532285 accaacttgttatagttaaataacttaaaggacctaagaggtacaaaaaaaatgtaaatgatcaacttattacaattaaataacttaaa 1532197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 20389822 - 20389633
Alignment:
Q  17 aataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgtt 116  Q
    |||||||| || ||||||||||| |||| |  ||| || ||||||||||||| |||| |||| |||||| |||||        | || ||||||||||||    
T  20389822 aataacttacatttttaagatctaaaattcgccaaattgttacagttaaataacttaaaggatctaattcgtacgaaaaaaacttaaagaccaacttgtt 20389723  T
Q  117 ataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 205  Q
    | ||||||||||||||||| | |||||| |||||  ||||||||||||  |  | ||| |||||  ||||||||||||||||| ||||||    
T  20389722 acaattaattaacttaaagcatctaagtagtacgaaaaaaaacttaaagaactactttgttacatttaaataacttaaaagacctatggt 20389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 28003341 - 28003434
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||| || |||||| || |||||| ||||||| |||||    
T  28003341 ttaaaggatcaacttgttacatttaattaacttaaaggacctaattggtacg-aaaaaactt-aacgatcaacttgttacaattaaataatttaaa 28003434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 5755685 - 5755594
Alignment:
Q  101 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||||||  ||||| ||||| |  |||||| |||||| |||||||||||||    
T  5755685 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg--aaaaaattaaagggccaatttgttacaattaaataacttaaa 5755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 12422352 - 12422455
Alignment:
Q  111 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 210  Q
    ||||||| |||||| ||||||||| ||| |||||| |||  |||||||||||| ||| ||||| |||||| |||||||||||||  | ||  ||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgataca-aaaaaacttaaaggatgaatttgttacaattaaataacttaaagaaattccggtgtaat 12422450  T
Q  211 ttaac 215  Q
    |||||    
T  12422451 ttaac 12422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 21920965 - 21921164
Alignment:
Q  15 cgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaactt 113  Q
    |||||||||| || ||||||| ||| |||| || ||| || |||  |||||||| |||| ||||||||||| |||||        |||||  | ||||||    
T  21920965 cgaataacttacatttttaaggtctaaaattccccaaatttttatggttaaataacttaaaggacctaattagtacggaaaaaacttaaataaacaactt 21921064  T
Q  114 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
    |||| | ||||||||||||||| || |||||||||   |||||||||||||||  ||||  ||| |  ||||||||||||| |||||||| |||||||||    
T  21921065 gttacagttaattaacttaaag-acataagtggtaaa-aaaaaacttaaatgacaaattagttatagttaaataacttaaatgacttatgatgtaattta 21921162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 32918595 - 32918529
Alignment:
Q  115 ttataattaattaacttaaaggacctaagtggtacgtaa-aaaacttaaatgatcaatttcttacaa 180  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||| ||||||    
T  32918595 ttataattaattaacttaaaggagctaagtgatacgaaataaaactcaaaagatcaatttattacaa 32918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 1532441 - 1532501
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  1532441 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 1532501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 6586938 - 6586862
Alignment:
Q  119 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    |||| ||||||||||| ||||||||| ||||  |||||| ||||  ||||||||| |||||| ||||| ||||||||    
T  6586938 aattgattaacttaaatgacctaagtagtaccaaaaaaatttaagagatcaatttattacaattaaattacttaaaa 6586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 301
Target Start/End: Complemental strand, 21595162 - 21595127
Alignment:
Q  266 atttctttaaatttataattttttcaaagtttgtta 301  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21595162 atttctttaaattcataattttttcaaagtttgtta 21595127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 48447362 - 48447283
Alignment:
Q  114 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 193  Q
    |||| |||||| |||||||||||||||||| | |||| |||| |||||||  |  ||||| |||||| ||||||||||||    
T  48447362 gttacaattaaataacttaaaggacctaagcgttacgaaaaatacttaaagtactaatttgttacaattaaataacttaa 48447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 5762753 - 5762696
Alignment:
Q  100 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa 157  Q
    ||||| |||||||||||| ||||||||||| || |  |||||||||||||| ||||||    
T  5762753 taaagaaccaacttgttacaattaattaacatatattacctaagtggtacggaaaaaa 5762696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 45477966 - 45478070
Alignment:
Q  109 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 208  Q
    ||||||||| || | ||||||||| ||| |||||||| ||   ||||||  | |||||||||||| |||||| ||||||| ||||||||  |  ||||||    
T  45477966 aacttgttacaacttattaacttatagggcctaagtgataaaaaaaaaaaattaatgatcaatttattacaattaaataatttaaaagatatgaggtgta 45478065  T
Q  209 attta 213  Q
    |||||    
T  45478066 attta 45478070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 408
Target Start/End: Complemental strand, 16840796 - 16840622
Alignment:
Q  236 ttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatat-aaaa 334  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | ||||||| ||||    
T  16840796 ttttttatagtttttaactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaa 16840697  T
Q  335 gaaaaagtatcagatgtcatcggata-tcgatactctactcgtgagttctacggtagaccacctttataattggt 408  Q
    |||||||||| |  ||||||  |||| | ||||||||||||||||||||||  ||| ||||| ||||||| ||||    
T  16840696 gaaaaagtattaagtgtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggt 16840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 22519807 - 22519921
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga 197  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || || |||||| |||||| ||||||| || |||||    
T  22519807 ttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataa-tttaaaga 22519905  T
Q  198 cttatggtgtaattta 213  Q
    | | ||||||||||||    
T  22519906 cctctggtgtaattta 22519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 48194394 - 48194483
Alignment:
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||| | |||| |||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| |||||||||||||    
T  48194394 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 48194483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 33617920 - 33618010
Alignment:
Q  121 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
    ||||||||||||||||||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||||| ||| | | ||||||||||    
T  33617920 ttaattaacttaaaggacctaagcggtacg--aaaaacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaattta 33618010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 22889674 - 22889586
Alignment:
Q  106 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22889674 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 22941338 - 22941250
Alignment:
Q  106 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22941338 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 53769786 - 53769861
Alignment:
Q  119 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||||| ||| ||||| ||||||||||||| | |||| ||||||||||| ||||| |||||| ||||||| |||||    
T  53769786 aattaaataatttaaaagacctaagtggtatgaaaaatacttaaatgattaatttattacaattaaataatttaaa 53769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 2323372 - 2323266
Alignment:
Q  109 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 208  Q
    ||||||||| ||||||||||||| || || |||  ||||||  |||||||||||| |   ||||| |||||| ||||||| ||||| ||||| || ||||    
T  2323372 aacttgttacaattaattaacttgaaagaactacatggtaccaaaaaaacttaaagggctaatttgttacaattaaataatttaaaggacttttgatgta 2323273  T
Q  209 atttaac 215  Q
    |||||||    
T  2323272 atttaac 2323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 42676809 - 42676883
Alignment:
Q  126 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 200  Q
    ||||||||| |||||||||| |||| ||||||| |||| ||| || || |||||| ||| |||||||||||||||    
T  42676809 taacttaaatgacctaagtgatacgaaaaaaacataaaggattaacttgttacaattaattaacttaaaagactt 42676883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 22519450 - 22519518
Alignment:
Q  6 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttag 74  Q
    |||||||||| |||||||| || ||||||||||||||||||| ||| ||  ||| |||||||| |||||    
T  22519450 tttaggtcccaaataacttacatttttaagatctgaaatcccccaaattgctacggttaaataacttag 22519518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 31095188 - 31095377
Alignment:
Q  6 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaagg 105  Q
    ||||||||  ||||||||| || ||||||||||||||||||   || ||  ||  || |||||||||| | ||||| ||||||| |       ||| |||    
T  31095188 tttaggtcttgaataacttacatttttaagatctgaaatcctaaaaattgatatggtaaaatagcttaaatgaccttattggtaggaaaaaacttatagg 31095287  T
Q  106 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaat-gatcaatttcttacaactaaataacttaaa 194  Q
    |  ||||||||| || ||||||||||||| ||||||| ||||||| ||| || |||| | ||  ||||| |||||| |||||||||||||    
T  31095288 attaacttgttacaactaattaacttaaaagacctaaatggtacgaaaataatttaagtggacaaatttattacaattaaataacttaaa 31095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 34013780 - 34013861
Alignment:
Q  109 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactta 192  Q
    ||||| ||||| |||||||| ||||||||| ||||| ||| | |||||  ||||||||| ||||| |||||| |||||||||||    
T  34013780 aacttattatatttaattaatttaaaggacttaagtagtatgaaaaaa--ttaaatgattaatttgttacaattaaataactta 34013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 22519448 - 22519373
Alignment:
Q  114 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataac 189  Q
    |||| |||||| |||||||||||||||||||| |||| |||| ||||||| ||  || || |||||| ||||||||    
T  22519448 gttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgttacaattaaataac 22519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 34717567 - 34717660
Alignment:
Q  100 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    |||| ||| ||||||||  |||||||||||||||| ||| || ||| |||| ||||||||||||| |  ||||| |||||| ||||||||||||||    
T  34717567 taaaagacaaacttgtttcaattaattaacttaaaagacttaggtgatacg-aaaaaacttaaat-acaaatttattacaattaaataacttaaaa 34717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 40070309 - 40070360
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg 150  Q
    |||||||| |||||||||||| |||||||||||||| || ||||||| ||||    
T  40070309 ttaaaggatcaacttgttatatttaattaacttaaatgatctaagtgatacg 40070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 20141835 - 20141745
Alignment:
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaa-acttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||| |||||||  | | | || |||||| |||||||||||||    
T  20141835 gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaaagacttaaagaacctacttattacaattaaataacttaaa 20141745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 31095131 - 31095078
Alignment:
Q  109 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    |||||||||||||||| ||||||||||||| |||||| || | ||||||||||||    
T  31095131 aacttgttataattaaataacttaaaggacgtaagtgatatg-aaaaaacttaaa 31095078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 22519354 - 22519313
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacct 140  Q
    ||||||||||| | |||||||||||| |||||||||||||||    
T  22519354 ttaaaggaccagcatgttataattaactaacttaaaggacct 22519313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 48194239 - 48194179
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    |||||||||||||||| | |||| ||||||||||  | ||||||||||| ||||||||||||    
T  48194239 aaggaccaacttgttacagttaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 48194179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 22519774 - 22519846
Alignment:
Q  126 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    ||||||||| ||||||| || |||  |||||||||||| |||||| || ||| || ||| |||||||||||||    
T  22519774 taacttaaatgacctaattgatacagaaaaaacttaaaggatcaacttgttataattaattaacttaaaagac 22519846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 31095186 - 31095106
Alignment:
Q  114 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||| |||||| |||||||||| ||||||||| |||  | || ||||||||||| || || ||| || |||||||||||||    
T  31095186 gttacaattaaataacttaaagaacctaagtgttacaaacaatacttaaatgattaacttgttataattaaataacttaaa 31095106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 55368844 - 55368780
Alignment:
Q  109 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaattt 173  Q
    ||||| ||| || ||| ||| ||||||||  ||| ||||||| ||||||||||||||||||||||    
T  55368844 aacttattacaaataaataatttaaaggatataaatggtacgaaaaaaacttaaatgatcaattt 55368780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 3866 - 4003
Alignment:
Q  77 gacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttctt 176  Q
    |||||||||||||||       ||||||||||||||||||| ||| ||||||||||||| |||| ||||||| | ||| |||||||||||||||||| ||    
T  3866 gacctaattggtacgaaaaaacttaaaggaccaacttgttacaatcaattaacttaaag-acctcagtggtaggaaaataacttaaatgatcaatttatt 3964  T
Q  177 acaactaaataacttaaaagacttatggtgtaatttaac 215  Q
    |||| |||||||| |||| ||||| ||||||||||||||    
T  3965 acaattaaataacataaatgacttctggtgtaatttaac 4003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 2277209 - 2277295
Alignment:
Q  108 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||| |||||||||||||    
T  2277209 caacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaa 2277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 27533069 - 27532989
Alignment:
Q  115 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  27533069 ttataattaaataacttaaaggacgtaagtggtacataaaaaacttaaaagatcaatttattacaattaaataacttaaaa 27532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 37064689 - 37064768
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 178  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||    
T  37064689 ttaaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaaaaacttaattgattaatttattac 37064768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 15907790 - 15907689
Alignment:
Q  111 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 210  Q
    ||||||||||||||||||||||||| |  ||||||||||| |||||||||||| || |||||| | |||| ||||||||||||| || || |||||||||    
T  15907790 cttgttataattaattaacttaaagaatataagtggtacgaaaaaaacttaaa-gaccaatttatcacaagtaaataacttaaaggatttctggtgtaat 15907692  T
Q  211 tta 213  Q
    |||    
T  15907691 tta 15907689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 15907944 - 15908058
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||| |  ||||| |||||  |||||| |||||| ||     
T  15907944 ttaaaggatcaacttgttataattaattaacctaaaaaacctaagtggtatgaaaaaaacttaaataactaatttattacagttaaatatcttaaaggat 15908043  T
Q  199 ttatggtgtaattta 213  Q
    || ||||||||||||    
T  15908044 ttttggtgtaattta 15908058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 12807666 - 12807748
Alignment:
Q  131 taaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
    |||||||||||||||||| |||||||| |||||  |||||||| | |||| ||||||||||||||||  | ||||||||||||    
T  12807666 taaaggacctaagtggtatgtaaaaaatttaaaaaatcaatttataacaattaaataacttaaaagatctctggtgtaattta 12807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 32566875 - 32566969
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    |||||| | ||||||| ||||||| |||||||| ||||||| | |||| |||||  | |||| ||||||||||||| ||  ||||||||||||||||    
T  32566875 aaggactagcttgttacaattaataaacttaaatgacctaaatagtacataaaa--cctaaaggatcaatttcttataataaaataacttaaaagac 32566969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 2967707 - 2967794
Alignment:
Q  108 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 196  Q
    ||||||||||||||||||||| |||||||| |||||| | | | ||||||||||||  | |||||| |||  | |||||||||||||||    
T  2967707 caacttgttataattaattaatttaaaggatctaagtagaaggaaaaaaacttaaa-aaacaatttgttaggattaaataacttaaaag 2967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 3806998 - 3807091
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||||| || ||||||||| |||||||||||||||| ||| ||||| |||  ||||||||||| | || |||||| |||| | ||||||| |||||    
T  3806998 ttaaagtactaacttgttaaaattaattaacttaaaagacataagttgta--taaaaaacttagaggaccaatttgttactattaaataatttaaa 3807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 45445141 - 45445210
Alignment:
Q  108 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 178  Q
    ||||||||||| ||||| ||| ||| ||||||||| ||||||| |||||||||||| || |||||| ||||    
T  45445141 caacttgttatgattaaataatttacaggacctaattggtacg-aaaaaacttaaacgaccaatttattac 45445210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 41123 - 41216
Alignment:
Q  125 ttaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga-cttatggtgtaatttaacat 217  Q
    ||||||||||  || ||||||||||  |||||||||||| ||  ||||| |||||| ||||||| ||||| || ||  ||||||||||||||||    
T  41123 ttaacttaaataacataagtggtacacaaaaaacttaaaggactaatttgttacaattaaataatttaaaggatctcttggtgtaatttaacat 41216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 32566769 - 32566724
Alignment:
Q  121 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatga 166  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  32566769 ttaaataacttaaaggacttaagtggcacgaaaaaaacttaaatga 32566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 2510190 - 2510015
Alignment:
Q  15 cgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttg 114  Q
    |||||||||| || |||||| || ||||||| ||||| || || || |||| || |||| |||| |||||| |||||       |||||||| ||| |||    
T  2510190 cgaataacttacatttttaaaatatgaaatctctcaaattgttgcaattaagtaacttaaaggatctaatttgtacggaaaaacttaaaggaacaatttg 2510091  T
Q  115 ttataattaattaacttaaaggacctaagtggtacgtaaaaaa-cttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    ||  |||||||||||||    ||||||||||||| | |||||| | ||||  | |||||| |||||| ||||||||||||||    
T  2510090 ttgcaattaattaactt----gacctaagtggtatgaaaaaaaacataaa--accaatttattacaattaaataacttaaaa 2510015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 3806932 - 3806856
Alignment:
Q  115 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactt 191  Q
    |||||||||| ||| | |||||||||||||| |||| |||| ||||||||||  || || |||||  ||||||||||    
T  3806932 ttataattaaataattaaaaggacctaagtgctacgaaaaatacttaaatgactaacttgttacagttaaataactt 3806856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 16419788 - 16419591
Alignment:
Q  6 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaagg 105  Q
    |||||| ||| |||||||| || || |||||||| ||||||||||| || |||| |||||||| |||| |||| | ||||||||||       ||||| |    
T  16419788 tttaggccccaaataacttacatttctaagatctaaaatccctcaaattgttacggttaaataacttaaaggatcaaattggtacgaaaaaacttaaatg 16419689  T
Q  106 accaacttgttataattaattaacttaaaggacctaagtggtac---gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 200  Q
    |||||||||||| |||||||||||||||| || |||| ||||||     |||| |||| |||||||||||| |||||| ||||||||||||| |||||    
T  16419688 accaacttgttacaattaattaacttaaatgatctaattggtacaaaagaaaatacttcaatgatcaatttgttacaattaaataacttaaaggactt 16419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 12458392 - 12458504
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 200  Q
    ||||||||||||||| ||||| ||||||||||||||||||||  |||| | ||||||||||||  | ||| || |||||| ||||||||||||| |||||    
T  12458392 aaggaccaacttgttttaatttattaacttaaaggacctaagaagtacgggaaaaaacttaaagtaccaaattgttacaattaaataacttaaaggactt 12458491  T
Q  201 atggtgtaattta 213  Q
     | ||||||||||    
T  12458492 ctagtgtaattta 12458504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 33547889 - 33547750
Alignment:
Q  56 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaa- 154  Q
    ||||| ||||||| |||| ||||||||| ||||| |       ||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||  |||     
T  33547889 ttacaattaaataacttaaaggacctaaatggtatgaaaaaacttaaaagacaaacttgttacaattaattaacttaaaggacataagtggaacaaaaat 33547790  T
Q  155 aaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||| || |||||| |||||| |||||||||||||    
T  33547789 aaacttaaaggaccaatttgttacaattaaataacttaaa 33547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 10544282 - 10544376
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    ||||| || |||||| ||||||||||||||||||| ||| |||| | ||||| ||||||||||||   ||||||| |||||  ||||||||||||||    
T  10544282 ttaaatgatcaacttattataattaattaacttaatggatctaactagtacgaaaaaaacttaaa--gtcaatttgttacagataaataacttaaaa 10544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 7202356 - 7202300
Alignment:
Q  107 ccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  7202356 ccaacatgttacaattaattaacataaaggacctaaatggtacgaaaaaaacttaaa 7202300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 17411193 - 17411270
Alignment:
Q  14 ccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 91  Q
    ||||||||||| || ||||||||||||||||||| ||| || ||||  ||||||| |||| || || |||||||||||    
T  17411193 ccgaataacttacatttttaagatctgaaatcccccaaattattacgattaaataacttaaagtacataattggtacg 17411270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 31314609 - 31314513
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 196  Q
    ||||| ||| || ||||||||||||| |||||||||  || |||||| |||  ||||||||||||||||||| || ||| || ||||||||| |||||    
T  31314609 ttaaatgactaatttgttataattaaataacttaaaa-acataagtgatactgaaaaaacttaaatgatcaacttgttataattaaataactcaaaag 31314513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 196181 - 196111
Alignment:
Q  16 gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattg 86  Q
    ||||||||| || ||||||||| |||||| |||||| || |||| ||||| || |||| ||||||||||||    
T  196181 gaataacttacatttttaagatatgaaatacctcaaattgttacggttaagtaacttaaaggacctaattg 196111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 196135 - 196063
Alignment:
Q  121 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||| ||||||||||||||||| || |||  ||||||||||||| |||||||| |||||| ||| ||| |||||    
T  196135 ttaagtaacttaaaggacctaattgatactgaaaaaacttaaat-atcaatttgttacaattaattaatttaaa 196063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 33547785 - 33547744
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacct 140  Q
    |||||||||||| |||||| |||||| |||||||||||||||    
T  33547785 ttaaaggaccaatttgttacaattaaataacttaaaggacct 33547744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 33547890 - 33547811
Alignment:
Q  114 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||| |||||| ||||||||||||||||| ||||| | |||||||||||| ||  || || |||||| ||| |||||||||    
T  33547890 gttacaattaaataacttaaaggacctaaatggtatg-aaaaaacttaaaagacaaacttgttacaattaattaacttaaa 33547811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 16554396 - 16554303
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    |||||||||||||||| |||| ||||||||||| ||| ||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 18470279 - 18470189
Alignment:
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  18470279 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 18470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 802251 - 802346
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||||||||| |||||||||| | ||||||  ||||||||||| |||||  ||||| || |||||| |||||  |||||||||||||    
T  802251 ttaaaggaccaacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaa 802346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 12656368 - 12656474
Alignment:
Q  106 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 205  Q
    |||||||| ||| ||||||||||||||||||   ||||||||||| |||||| |||||  |||||| | |||||| ||||||||||||| |||||  |||    
T  12656368 accaacttattacaattaattaacttaaagggtttaagtggtacg-aaaaaatttaaaaaatcaatatgttacaattaaataacttaaaggactttcggt 12656466  T
Q  206 gtaattta 213  Q
    ||||||||    
T  12656467 gtaattta 12656474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 363804 - 363615
Alignment:
Q  6 tttaggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaag 104  Q
    |||||| || ||||||||| || ||||||||||| |||| |||  || || |||| |||||||| |||| | ||||||||| |||||       |||||     
T  363804 tttaggcccagaataacttacatttttaagatctaaaatacccaaaaattgttacggttaaataacttaaatgacctaattagtacgaaaaaacttaaa- 363706  T
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaa-acttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||| |||||||  | | |||| |||||| |||||||||||||    
T  363705 gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaaagacttaaagaacctatttattacaattaaataacttaaa 363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 16026194 - 16026108
Alignment:
Q  108 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    |||||| ||| | |||| |||||||||||||||||| |||||| ||||||  |||||||| || || |||||| |||||||||||||    
T  16026194 caacttattacagttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaa 16026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 11016877 - 11017075
Alignment:
Q  19 taacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn--ttaaaggaccaacttgtt 116  Q
    |||||| || ||||||||| | ||||| ||||| || |||| ||||||||| ||| ||||||||||||| |||         |||||| | |||||||||    
T  11016877 taacttacatttttaagattttaaatctctcaaattgttacggttaaatagtttaaaggacctaattggaacgaaaaacaacttaaag-atcaacttgtt 11016975  T
Q  117 ataattaattaacttaaaggacctaagtggtacgtaaaaaacttaa-atgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 215  Q
    | |||||| |||||||||  ||||||||| || | ||||||  ||| | ||| ||||| ||| || ||||||||||||| ||| ||| ||||||||||||    
T  11016976 acaattaaataacttaaaacacctaagtgatatgcaaaaaaaataagaagattaatttattataattaaataacttaaaggacatatagtgtaatttaac 11017075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 46530258 - 46530163
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||| | ||||||||| |||||||||||||||| |||||||||||| || |||| | |||||  | || ||| | |||| |||||||||||||    
T  46530258 ttaaagggcaaacttgttacaattaattaacttaaaagacctaagtggtgcgaaaaagaattaaagaaccagtttgtgacaattaaataacttaaa 46530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 47726506 - 47726693
Alignment:
Q  6 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaag 104  Q
    ||||| |||||||||||||||| ||||||||| |||||| |||||| || |||  || ||||| |  | |||||||  |||||||         ||||||    
T  47726506 tttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgttaaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaag 47726605  T
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 193  Q
    ||||| ||||||  |  ||||||||||||| |||||||||| || | ||||||||||||| | |||||| ||||||  |||||||||||    
T  47726606 gaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaaaacttaaat-accaatttattacaataaaataacttaa 47726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 47747812 - 47747999
Alignment:
Q  6 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaag 104  Q
    ||||| |||||||||||||||| ||||||||| |||||| |||||| || |||  || ||||| |  | |||||||  |||||||         ||||||    
T  47747812 tttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgttaaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaag 47747911  T
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 193  Q
    ||||| ||||||  |  ||||||||||||| |||||||||| || | ||||||||||||| | |||||| ||||||  |||||||||||    
T  47747912 gaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaaaacttaaat-accaatttattacaataaaataacttaa 47747999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 48130268 - 48130213
Alignment:
Q  106 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    |||||||||||| |||||||||||||||| || |||||||||||  ||||||||||||    
T  48130268 accaacttgttacaattaattaacttaaatgatctaagtggtac--aaaaaacttaaa 48130213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 48130428 - 48130516
Alignment:
Q  111 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 200  Q
    ||||||| || ||||||||||||| ||||||| |||||   | ||||||||||| |||||||| |||||| ||||||| ||||| |||||    
T  48130428 cttgttacaagtaattaacttaaaagacctaaatggtaaa-agaaaacttaaataatcaatttattacaattaaataatttaaaggactt 48130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 363806 - 363906
Alignment:
Q  114 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag-acttatggtgtaattt 212  Q
    |||| ||||||  |||||||| ||| ||||   |||| |||| ||||||||||  |||||||||||| ||||||||||||||| || | |||||||||||    
T  363806 gttacaattaaacaacttaaatgacttaagcattacgaaaaatacttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaattt 363905  T
Q  213 a 213  Q
    |    
T  363906 a 363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 26706353 - 26706432
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaactt-aaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 178  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| ||| || |||| ||||||||||||  |||||||| ||||    
T  26706353 ttaaaggacaaacttgtaataattaattaacttaaaaggacttaaatgatacg-aaaaaacttaaagaatcaatttattac 26706432  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 46530411 - 46530517
Alignment:
Q  111 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa---cttaaat-gatcaatttcttacaactaaataacttaaaagacttatggtg 206  Q
    ||||||| |||||||||||||||| ||| | ||||||||| ||||||   ||||||  || |||||| |||||| ||||||||| ||| ||| | |||||    
T  46530411 cttgttacaattaattaacttaaatgacgtgagtggtacgaaaaaaaaaacttaaaaagagcaatttgttacaaataaataactaaaatgacatctggtg 46530510  T
Q  207 taattta 213  Q
    |||||||    
T  46530511 taattta 46530517  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 2125101 - 2125168
Alignment:
Q  235 tttttgtatggttcttaactaaact-acaaaaatttctttaaatttataattttttcaaagtttgtta 301  Q
    |||| |||||||||||||||||| | || |  |||| ||||||||||||||||| |||||||||||||    
T  2125101 ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta 2125168  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 16026346 - 16026406
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    |||||||||||||||| |||||| ||||||||||  | ||||| ||||| ||||||||||||    
T  16026346 aaggaccaacttgttacaattaagtaacttaaagagcgtaagttgtacg-aaaaaacttaaa 16026406  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 18470439 - 18470495
Alignment:
Q  106 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    |||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  18470439 accaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 18470495  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 29954943 - 29954870
Alignment:
Q  16 gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggta 89  Q
    ||||||||| || ||||||||| |||||| |  ||| || |||| |||||||| |||| |||||||||||||||    
T  29954943 gaataacttacatttttaagatatgaaattctccaaattattacggttaaataacttaaaggacctaattggta 29954870  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 23808083 - 23808199
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 198  Q
    ||||| ||||||||| ||| |||||| ||||||||  ||||||| || || |  ||||||| ||| ||  ||||| |||||| |||| |||||||||||     
T  23808083 ttaaatgaccaacttattacaattaaataacttaatagacctaactgatatgagaaaaactaaaaagaataatttattacaattaaacaacttaaaagat 23808182  T
Q  199 ttatggtgtaatttaac 215  Q
     | || |||||||||||    
T  23808183 ctttgatgtaatttaac 23808199  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 51265894 - 51265984
Alignment:
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 194  Q
    ||||||||||||||| |||| |||||||||||| ||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  51265894 gaccaacttgttatagttaaataacttaaaggatctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 51265984  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 44291182 - 44291025
Alignment:
Q  6 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaag 104  Q
    ||||||||||||||||||| || ||||||||||| |||||||  || || |||| |||||||| |||| || ||||  ||||||||        |||||     
T  44291182 tttaggtcccgaataacttacatttttaagatctaaaatccccaaaattgttacggttaaataacttaaag-accttgttggtacggaaaaaacttaaaa 44291084  T
Q  105 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    | ||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||||    
T  44291083 ggccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaacttaaa 44291025  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 44291413 - 44291509
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 195  Q
    ||||||||| ||||||||| |||||| ||||||||||||| |||||| |||  |||||| ||| | || |||||| |||||| ||||||||||||||    
T  44291413 ttaaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 48200367 - 48200471
Alignment:
Q  109 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 208  Q
    ||||| ||| ||| |||||| ||||| ||| |||| |||||| |||||| ||||||||||||||  |||||| ||||||| |||||||| || | |||||    
T  48200367 aacttattacaatcaattaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttacaattaaataagttaaaagatttctagtgta 48200466  T
Q  209 attta 213  Q
    |||||    
T  48200467 attta 48200471  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 33291582 - 33291676
Alignment:
Q  119 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
    |||||||||||||||| ||| |||||||||   |||||  |||||  |  ||||| |||||| ||||||||||||| |||||||| |||||||||    
T  33291582 aattaattaacttaaatgacataagtggtataaaaaaagtttaaagtactaatttgttacaattaaataacttaaaggacttatgttgtaattta 33291676  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 51265739 - 51265679
Alignment:
Q  102 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 163  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  51265739 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 51265679  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 1662257 - 1662357
Alignment:
Q  112 ttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 211  Q
    |||||| ||||||||||| ||| ||| ||||||||||   |||||||||||| ||||||||| || ||| ||||||  ||||| ||| | || |||||||    
T  1662257 ttgttacaattaattaacataatggatctaagtggtata-aaaaaacttaaaagatcaatttattgcaattaaatactttaaaggacctctgatgtaatt 1662355  T
Q  212 ta 213  Q
    ||    
T  1662356 ta 1662357  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 9343215 - 9343251
Alignment:
Q  99 ttaaaggaccaacttgttataattaattaacttaaag 135  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  9343215 ttaaaggaccaacttattataattaaataacttaaag 9343251  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 14747077 - 14747167
Alignment:
Q  121 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 213  Q
    |||| |||| |||| |||||||||||||   ||||||||||||  ||||| || |||||| ||||||| ||||||||||| | ||||||||||    
T  14747077 ttaaataacataaatgacctaagtggtaaa-aaaaaacttaaaa-atcaaattgttacaattaaataaattaaaagactttttgtgtaattta 14747167  T

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