View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_44 (Length: 350)

Name: NF6871A_low_44
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_44
NF6871A_low_44
[»] chr6 (19 HSPs)
chr6 (220-345)||(17095606-17095739)
chr6 (126-309)||(17066986-17067177)
chr6 (152-345)||(16870346-16870529)
chr6 (152-222)||(16558631-16558701)
chr6 (154-230)||(16984995-16985068)
chr6 (152-227)||(16655604-16655679)
chr6 (273-338)||(16985125-16985190)
chr6 (152-193)||(16784821-16784862)
chr6 (28-61)||(16985033-16985066)
chr6 (305-345)||(16794920-16794960)
chr6 (301-345)||(16841534-16841578)
chr6 (294-345)||(16975728-16975779)
chr6 (310-345)||(17067196-17067231)
chr6 (315-345)||(16655782-16655812)
chr6 (315-343)||(16558494-16558522)
chr6 (29-73)||(16655635-16655679)
chr6 (317-345)||(16778898-16778926)
chr6 (317-345)||(16784994-16785022)
chr6 (29-73)||(16870454-16870498)
[»] chr3 (2 HSPs)
chr3 (139-345)||(7055690-7055894)
chr3 (305-345)||(38941762-38941802)
[»] scaffold0133 (4 HSPs)
scaffold0133 (167-221)||(6069-6120)
scaffold0133 (305-345)||(10558-10598)
scaffold0133 (305-345)||(15855-15895)
scaffold0133 (317-345)||(6222-6250)
[»] chr8 (1 HSPs)
chr8 (273-345)||(13375754-13375832)
[»] scaffold0256 (1 HSPs)
scaffold0256 (317-345)||(6881-6909)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 345
Target Start/End: Original strand, 17095606 - 17095739
Alignment:
Q  220 tttgatatagtaagacaaaagataaatgaacaagtaaagaggttcattaaatt--------ttaccacgaaatgttggttttacatcagattccaattta 311  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||        ||||||||||||||||||||| |||||| |||||||| |    
T  17095606 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaattaaattaaattaccacgaaatgttggttttgcatcagtttccaattca 17095705  T
Q  312 aattcaggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||||||||||||||| |||||||||||    
T  17095706 aattcaggaatgtgagctatctaatgccaatctt 17095739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 309
Target Start/End: Original strand, 17066986 - 17067177
Alignment:
Q  126 ggcggtgccagaattgcttccccgtattccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttga- 224  Q
    |||||||| ||||| ||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |     
T  17066986 ggcggtgcaagaatcgcttcccccaattccatgctgatttaatattctctgcacacattgttcaatataataagtctaaaatcacagtatataattttat 17067085  T
Q  225 --tatagtaagacaaaagataaatg--aacaagtaaagaggttcattaaatt---ttaccacgaaatgttggttttacatcagattccaatt 309  Q
      ||||||||||||||| | ||| |  || || | ||||| ||| |||||||   ||||||| || |||||||||| ||||||||| |||||    
T  17067086 tctatagtaagacaaaaaagaaaggaaaaaaaattaagagattcgttaaattaaattaccacaaattgttggttttgcatcagattgcaatt 17067177  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 345
Target Start/End: Complemental strand, 16870529 - 16870346
Alignment:
Q  152 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatat---agtaagacaaaagataaatga 248  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||| || |||||| ||||   ||||| |||||||| ||| ||    
T  16870529 ttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattttatattatagtaacacaaaagacaaagga 16870430  T
Q  249 acaagtaaagaggttcattaaattttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgccaatctt 345  Q
    |    | ||       ||||||||  ||||| |||||||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16870429 a----tcaa-------attaaatt--accacaaaatgttggttttttatcagattccaaataaaattcaggaatgtgagctatcttatgccaatctt 16870346  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 16558701 - 16558631
Alignment:
Q  152 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataattt 222  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||| || ||||||    
T  16558701 ttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattt 16558631  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 16984995 - 16985068
Alignment:
Q  154 ccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatatagt 230  Q
    |||||||||| |||||||||| ||||| ||||||||||||||   |||||||||||||| |||||||||||||||||    
T  16984995 ccatgctgatatgatattctctgcacatattgttcaatataa---gtctaaaatcacaccatataatttgatatagt 16985068  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 16655604 - 16655679
Alignment:
Q  152 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatat 227  Q
    ||||||||||||  |||||| || |||||||||||||||||||||||||||| |||||||| || | |||||||||    
T  16655604 ttccatgctgataagatattatctgcacacattgttcaatataataagtctataatcacaccatctgatttgatat 16655679  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 16985125 - 16985190
Alignment:
Q  273 ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgc 338  Q
    |||||| | |||||||||||| || ||||||| || | ||||||||||||||||||||||||||||    
T  16985125 ttaccagggaatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgc 16985190  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 16784821 - 16784862
Alignment:
Q  152 ttccatgctgatttgatattctcagcacacattgttcaatat 193  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  16784821 ttccatgctgatttgatattctctgcacacattgtttaatat 16784862  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 16985066 - 16985033
Alignment:
Q  28 tatatcaaattatatggtgtgattttagacttat 61  Q
    ||||||||||||||||||||||||||||||||||    
T  16985066 tatatcaaattatatggtgtgattttagacttat 16985033  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 16794920 - 16794960
Alignment:
Q  305 caatttaaattcaggaatgtgagctatcttatgccaatctt 345  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  16794920 caattcaaattcaggaacgtgagctatcttatgccaatctt 16794960  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 16841534 - 16841578
Alignment:
Q  301 attccaatttaaattcaggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||| |||  |||||||||||||||||||||||||||||    
T  16841534 attccaatttcaatctaggaatgtgagctatcttatgccaatctt 16841578  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 16975779 - 16975728
Alignment:
Q  294 acatcagattccaatttaaattcaggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||||||||||||||| |||||  |||||| |||||| ||||||||    
T  16975779 acatcagattccaatttaaatttaggaacatgagctgtcttataccaatctt 16975728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 17067196 - 17067231
Alignment:
Q  310 taaattcaggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||||||||||||||| |||||||||||||    
T  17067196 taaattcaggaatgtgagctattttatgccaatctt 17067231  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 345
Target Start/End: Original strand, 16655782 - 16655812
Alignment:
Q  315 tcaggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||||||||||||||||||||||||    
T  16655782 tcaggaatgtgagctatcttatgccaatctt 16655812  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 343
Target Start/End: Complemental strand, 16558522 - 16558494
Alignment:
Q  315 tcaggaatgtgagctatcttatgccaatc 343  Q
    |||||||||||||||||||||||||||||    
T  16558522 tcaggaatgtgagctatcttatgccaatc 16558494  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 16655679 - 16655635
Alignment:
Q  29 atatcaaattatatggtgtgattttagacttattatatcgaacaa 73  Q
    ||||||||| | ||||||||||| |||||||||||||| ||||||    
T  16655679 atatcaaatcagatggtgtgattatagacttattatattgaacaa 16655635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 16778898 - 16778926
Alignment:
Q  317 aggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||||||||||||||||||||||    
T  16778898 aggaatgtgagctatcttatgccaatctt 16778926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 16784994 - 16785022
Alignment:
Q  317 aggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||||||||||||||||||||||    
T  16784994 aggaatgtgagctatcttatgccaatctt 16785022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 16870454 - 16870498
Alignment:
Q  29 atatcaaattatatggtgtgattttagacttattatatcgaacaa 73  Q
    |||| |||||| ||||||||||| |||||||||||||| ||||||    
T  16870454 atataaaattagatggtgtgattatagacttattatattgaacaa 16870498  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 345
Target Start/End: Complemental strand, 7055894 - 7055690
Alignment:
Q  139 ttgcttccccgtattccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatatagtaagacaaa 238  Q
    ||||||||| ||||| ||||||||| |||||||||| |||| |||||||||||||||   ||||| || || |  ||||   | |||||||||||| |||    
T  7055894 ttgcttccctgtattgcatgctgatatgatattctctgcacccattgttcaatataa---gtctagaaccatagcatat---tggatatagtaagaaaaa 7055801  T
Q  239 agataaatgaacaag-taaagaggttcattaaatt---ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatctt 334  Q
    ||| ||| ||| ||  ||||| | || ||||||||   ||||||| ||||| || |||| |||||||||||||| | ||| | |||||||||||||||||    
T  7055800 agagaaaggaataatataaagggattgattaaattaaattaccacaaaatgatgtttttgcatcagattccaatatcaatgccggaatgtgagctatctt 7055701  T
Q  335 atgccaatctt 345  Q
    |||||||||||    
T  7055700 atgccaatctt 7055690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 38941802 - 38941762
Alignment:
Q  305 caatttaaattcaggaatgtgagctatcttatgccaatctt 345  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  38941802 caattcaaattcaggaatgtgagctatcttatgccaatctt 38941762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 6069 - 6120
Alignment:
Q  167 atattctcagcacacattgttcaatataataagtctaaaatcacactatataatt 221  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| ||||||||    
T  6069 atattctctgcacacattgttcaat---ataagtctaaaatcacaccatataatt 6120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 10558 - 10598
Alignment:
Q  305 caatttaaattcaggaatgtgagctatcttatgccaatctt 345  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  10558 caattcaacttcaggaatgtgagctatcttatgccaatctt 10598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 15855 - 15895
Alignment:
Q  305 caatttaaattcaggaatgtgagctatcttatgccaatctt 345  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  15855 caattgaaattgaggaatgtgagctatcttatgccaatctt 15895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 6222 - 6250
Alignment:
Q  317 aggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||||||||||||||||||||||    
T  6222 aggaatgtgagctatcttatgccaatctt 6250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 13375754 - 13375832
Alignment:
Q  273 ttaccacgaaatgttggttttacatca------gattccaatttaaattcaggaatgtgagctatcttatgccaatctt 345  Q
    ||||||| ||||||||||||| |||||      |||||||||| || |||||| |||||||||||||||| ||||||||    
T  13375754 ttaccacaaaatgttggttttgcatcaaatttagattccaattcaacttcaggtatgtgagctatcttatcccaatctt 13375832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 6881 - 6909
Alignment:
Q  317 aggaatgtgagctatcttatgccaatctt 345  Q
    |||||||||||||||||||||||||||||    
T  6881 aggaatgtgagctatcttatgccaatctt 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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