View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_47 (Length: 342)
Name: NF6871A_low_47
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_47 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 33102087 - 33102422
Alignment:
| Q |
7 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102087 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
33102186 |
T |
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| Q |
107 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
206 |
Q |
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| T |
33102187 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
33102286 |
T |
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| Q |
207 |
cttatggttcaagttgtggttcttcagtgtatcacttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
306 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102287 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
33102386 |
T |
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| Q |
307 |
ttcctgaaactgctgcttctattatttcctttaagg |
342 |
Q |
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| T |
33102387 |
ttcctgaaactgctgcttctattatttcctttaagg |
33102422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 328
Target Start/End: Original strand, 52716522 - 52716694
Alignment:
| Q |
156 |
gttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcacttggtacactttgt |
255 |
Q |
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| T |
52716522 |
gttatgggaatccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagtgttatttggtacactctta |
52716621 |
T |
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| Q |
256 |
tattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctat |
328 |
Q |
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| T |
52716622 |
tgttgtttttgtttgaatatagagctgctaaacttcttataacagaacagtttcctgaaactgcagcttctat |
52716694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 10838990 - 10838660
Alignment:
| Q |
12 |
atgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagcttagagt |
111 |
Q |
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||||||| |||||||| || || || ||||||||||||||||||||||| | |||||| || | ||||| ||||| ||||| | ||||| | |
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| T |
10838990 |
atgaacttcaggttcatagctgcagacacacttcaaaaaatcatcatgctagtagcactttcattatggacattgttcactaaaaatggcaatttagaat |
10838891 |
T |
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| Q |
112 |
ggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttat |
211 |
Q |
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| T |
10838890 |
ggatgataacaatcttttcattatcaacacttcctaacactttggttatgggaattcctttgttaattgctatgtatggtgattattcaggtagcttaat |
10838791 |
T |
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| Q |
212 |
ggttcaagttgtggttcttcagtgtatcacttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcct |
311 |
Q |
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| T |
10838790 |
ggttcaagttgtggttcttcagtgtattatttggtacactcttttgctttttctttttgagtaccgtggtgctaagcttttaatcatggagcagtttcca |
10838691 |
T |
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| Q |
312 |
gaaactgctgcttctattatttcctttaagg |
342 |
Q |
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| T |
10838690 |
gaaaccgcggcttccatcgtttcctttaagg |
10838660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 183 - 331
Target Start/End: Original strand, 34971055 - 34971203
Alignment:
| Q |
183 |
atgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcacttggtacactttgttattgtttctttttgagtatcgtggtg |
282 |
Q |
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||||||||||| |||| |||||||||||||||||| | || |||||||| ||||||| |||||| || ||| | |||||| | ||||||||| | |||| |
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| T |
34971055 |
atgtatggtgatgattctggtacccttatggttcaaatagttgttcttcaatgtatcatttggtatacattgatgttgtttttgtttgagtataggggtg |
34971154 |
T |
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| Q |
283 |
ctaagcttctaattatggaacagtttcctgaaactgctgcttctattat |
331 |
Q |
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| T |
34971155 |
ctaggattctcattgttgaacagtttcctgatactgctggttctattat |
34971203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 254
Target Start/End: Original strand, 25038852 - 25038959
Alignment:
| Q |
147 |
aacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcacttggt |
246 |
Q |
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| T |
25038852 |
aacactttggttatgggaattcctttacttaaaggaatgtatggtgaattttcaggtagtttaatggtacaaattgttgttcttcaatgtatcatttggt |
25038951 |
T |
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| Q |
247 |
acactttg |
254 |
Q |
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| T |
25038952 |
atactttg |
25038959 |
T |
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