View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_49 (Length: 337)
Name: NF6871A_low_49
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 15091117 - 15090803
Alignment:
| Q |
14 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
113 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15091117 |
tggacatcgcgaaggtcacatggttcactatctcgacccgtttttggttacaaggttgtcacacagaatgaaggtagaaatggcgattgggttatggttc |
15091018 |
T |
|
| Q |
114 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15091017 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccacaggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
15090918 |
T |
|
| Q |
214 |
acacactatcaacacttcaaattggcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgt |
313 |
Q |
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||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
15090917 |
acacactgccaacactggaaattggcgtgacaagaatgtgaggagtctgtcttcacaggagattgctgaccgtcgttaaaaaggactctgttttaaatgt |
15090818 |
T |
|
| Q |
314 |
ggaggtccgtatcat |
328 |
Q |
| |
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||||| ||||||||| |
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| T |
15090817 |
ggaggcccgtatcat |
15090803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 38 - 328
Target Start/End: Original strand, 43010593 - 43010877
Alignment:
| Q |
38 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43010593 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43010692 |
T |
|
| Q |
138 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
237 |
Q |
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|||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43010693 |
gttttcctggaggaaacagtggaggaaa---caatcgtg---cacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43010786 |
T |
|
| Q |
238 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgtggaggtccgtatcat |
328 |
Q |
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| T |
43010787 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgctgaccgtcgtcaaaaaggactctgttttaaatgtggaggtccgtatcat |
43010877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 38 - 328
Target Start/End: Original strand, 43012890 - 43013174
Alignment:
| Q |
38 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43012890 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43012989 |
T |
|
| Q |
138 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
237 |
Q |
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|||||||||||||||||||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43012990 |
gttttcctggaggaaacagtggaggaaa---caatcgtg---cacgtgaaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43013083 |
T |
|
| Q |
238 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgtggaggtccgtatcat |
328 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
43013084 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgctgaccgtcgtcaaaaaggactctgttttaaatgtggaggtccgtatcat |
43013174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 25203934 - 25203620
Alignment:
| Q |
14 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
113 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
25203934 |
tggacatcgagaaggtcacatggttcactatctcgacctgtttttggtaacaaggttgttacacaaaatgaaggtagaaagggcgattgggttatggttc |
25203835 |
T |
|
| Q |
114 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
213 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||| |
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| T |
25203834 |
gtaataacaaagacaatcgtgatcattttcctggaggaaacagtggaggaagatccataggtggtttgcgtggaatgtttaatgttagacaaaacaaaac |
25203735 |
T |
|
| Q |
214 |
acacactatcaacacttcaaattggcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgt |
313 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25203734 |
acacactaccaacattggaaattggcgtgacaagaatgtgaggaatctgtcttcacaggagattgctgaccgtcgtaaaaaaggactctgttttaaatgt |
25203635 |
T |
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| Q |
314 |
ggaggtccgtatcat |
328 |
Q |
| |
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||||| ||||||||| |
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| T |
25203634 |
ggaggcccgtatcat |
25203620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 35074796 - 35075035
Alignment:
| Q |
14 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
113 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
35074796 |
tggacatcgcgaaggtcacatggttcactatctcgacccatttttggtaacaaggttgtcacacagaatgaaggtagaaatggcgatcgggttatggttc |
35074895 |
T |
|
| Q |
114 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35074896 |
ataataacaaagacaatcatgatcgttttcttggaggaaacagttgaggaaaattcacaggtggtgcacgtggaatgtttaatgttcgacaaaacaaaac |
35074995 |
T |
|
| Q |
214 |
acacactatcaacacttcaaattggcgtgacaagaatgtg |
253 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
35074996 |
acacactgccaacactggaaattggcgtgacaagaatgtg |
35075035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 38 - 328
Target Start/End: Complemental strand, 25676775 - 25676491
Alignment:
| Q |
38 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25676775 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
25676676 |
T |
|
| Q |
138 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25676675 |
gttttcctggaggaaacagtggaggaaa---caatcgtg---cacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
25676582 |
T |
|
| Q |
238 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgctgaccgtcgtaaaaaaggactatgttttaaatgtggaggtccgtatcat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
25676581 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgctgaccgtcgtcaaaaaggactctgttttaaatgtggaggtccgtatcat |
25676491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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