View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_52 (Length: 330)
Name: NF6871A_low_52
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_52 |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 41947176 - 41947494
Alignment:
| Q |
15 |
atgaaacacccacaatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctttaccaaccacaaaaacaa |
114 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947176 |
atgaaacacctacaatcaaagtgcttttttacaagcttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctttaccaaccacaaaaacaa |
41947275 |
T |
|
| Q |
115 |
acatgagctcattggttccctccaccaaacaactaa---ccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagc |
211 |
Q |
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||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947276 |
acatgagctcattggttcccttcaccaatcaactaattaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagc |
41947375 |
T |
|
| Q |
212 |
cattcgaagatcaccaaaacattcacttccagtagtccctttagagcttccttgtccattttcagtcgtaaacttatacctcgcactactttctttgatt |
311 |
Q |
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|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947376 |
cattcgaagatcaccaaaccattcactttcagtagtccctttagagcttccttgtccattttcagtcgtaaacttatacctcgcactactttctttgatt |
41947475 |
T |
|
| Q |
312 |
tcaccaaccgaagacttga |
330 |
Q |
| |
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||||||||||||||||||| |
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| T |
41947476 |
tcaccaaccgaagacttga |
41947494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 59 - 328
Target Start/End: Original strand, 49386435 - 49386707
Alignment:
| Q |
59 |
aaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagctcattggttccctccaccaaacaactaaccaat |
155 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49386435 |
aaaaacatgcttagaaagagttgtttttccaagtcctcctataccaaacacataaaccaacatgagcttattggttccctccaccaaacaactaaccaat |
49386534 |
T |
|
| Q |
156 |
tcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcgaagatcaccaaaacattcacttccagtagtccctttag |
255 |
Q |
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||||||||||| |||||||||||||||||||| |||||| |||||| || |||||||||||||| ||| ||||| |||| |||||||||||||||||| |
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| T |
49386535 |
tcatctcttggcgactcaaatcccacaacttggttctcttcaatgaattgtgaagccattcgaaggtcaacaaaattttcatttccagtagtccctttag |
49386634 |
T |
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| Q |
256 |
agcttccttgtccattttcagtcgtaaacttatacctcgcactactttctttgatttcaccaaccgaagactt |
328 |
Q |
| |
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| ||||||||| |||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
49386635 |
aacttccttgtacattttcattcgtaaatttatagctcgcacttctttctttgatttcaccaaccgaatactt |
49386707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 3221428 - 3221746
Alignment:
| Q |
15 |
atgaaacacccacaatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaa |
111 |
Q |
| |
|
|||||||| | |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |
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| T |
3221428 |
atgaaacatcgacaatcaaagtgctttttcacaagcttgttatcaaaaacatgcttagaaagagttgtttttccaagtcctcccataccaaccacagaaa |
3221527 |
T |
|
| Q |
112 |
caaacatgagctcattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagc |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
3221528 |
tcaacatgagctcatttgttccctccaccaaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaatgaaatgcgaagc |
3221627 |
T |
|
| Q |
212 |
cattcgaagatcaccaaaacattcacttccagtagtccctttagagcttccttgtccattttcagtcgtaaacttatacctcgcactactttctttgatt |
311 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||| ||| | ||||||||| ||| |||| |||||||||||| |
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| T |
3221628 |
cattcgaagatcaccaaaactttcatttccagtagtccctctagagcttcctggtccattgtcaaccacaaacttatatctcacacttctttctttgatt |
3221727 |
T |
|
| Q |
312 |
tcaccaaccgaagacttga |
330 |
Q |
| |
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||||||||||||| ||||| |
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| T |
3221728 |
tcaccaaccgaagtcttga |
3221746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 3201038 - 3200919
Alignment:
| Q |
99 |
ccaaccacaaaaacaaacatgagctcattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaa |
198 |
Q |
| |
|
||||| ||| |||| |||||||||||| |||||||| ||||||| || ||||||||||||||| |||| |||||||| ||||||||||||||||||| || |
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| T |
3201038 |
ccaacaacagaaaccaacatgagctcactggttccccccaccaagcatctaaccaattcatcttttggggactcaaaccccacaacttgagtctcttgaa |
3200939 |
T |
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| Q |
199 |
tgaaatgcgaagccattcga |
218 |
Q |
| |
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|||||| | |||||||||| |
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| T |
3200938 |
tgaaataaggagccattcga |
3200919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 3721713 - 3721519
Alignment:
| Q |
27 |
caatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagct |
123 |
Q |
| |
|
||||||||||| |||| || | || |||||||||||||||||||| ||||||||||||||| |||||| | || |||||| |||| | || ||| |
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| T |
3721713 |
caatcaaagtggcttttcaccaactggttatcaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctaccacagaaacccatgtgcgct |
3721614 |
T |
|
| Q |
124 |
cattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcga |
218 |
Q |
| |
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|||||| |||| |||||||| |||||||||||||| | |||| |||||||| || |||||||||||||||| |||||||| | |||||||||| |
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| T |
3721613 |
cattggctccccccaccaaaagactaaccaattcatttgttggggactcaaacccaacaacttgagtctcttcaatgaaataaggagccattcga |
3721519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 228
Target Start/End: Original strand, 3303938 - 3304121
Alignment:
| Q |
51 |
tcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctt-------taccaaccacaaaaacaaacatgagctcattggttccctccaccaaa |
143 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||| |||| ||| || |||||||| ||| |||||||| |
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| T |
3303938 |
tcgttatcaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctacca-ccacagaaaccaacgtgtgctcattgtctccacccaccaaa |
3304036 |
T |
|
| Q |
144 |
caactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcgaagatcaccaa |
228 |
Q |
| |
|
| || || |||||||| | |||| |||||||||||||||||||||||||||| |||||||| | |||||||||| | ||||||| |
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|
| T |
3304037 |
cgacgaatcaattcatttgttggggactcaaatcccacaacttgagtctcttcaatgaaatagggagccattcgagggtcaccaa |
3304121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 3310589 - 3310784
Alignment:
| Q |
26 |
acaatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagc |
122 |
Q |
| |
|
|||||||||||||| ||| ||| || ||||| |||||||| ||||| |||||| |||||||| |||||| | ||||| ||| ||| ||||| || |
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| T |
3310589 |
acaatcaaagtgctctttcacatactggttattaaaaacatacttagcaagagtcgtttttccaagtcctcccatgccaacaacagaaatcaacatcagg |
3310688 |
T |
|
| Q |
123 |
tcattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcga |
218 |
Q |
| |
|
||| ||||||| ||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |||||||||||| |
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|
| T |
3310689 |
tcactggttccggacaccaaataactaatcaattcatctcttggagactcaatccccacaacttgagtctcttcaatgaatagggaagccattcga |
3310784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 3198349 - 3198479
Alignment:
| Q |
54 |
ttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagctcattggttccctccaccaaacaactaa |
150 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||| || |||||| | ||||| ||| |||| |||||| ||||| |||||||||||||||| | |||| |
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| T |
3198349 |
ttatcaaaaacatacttagcaagagtcgttttaccgagtcctcccatgccaacaacagaaaccaacatgcgctcactggttccctccaccaagaatctaa |
3198448 |
T |
|
| Q |
151 |
ccaattcatctcttggtgactcaaatcccac |
181 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |
|
|
| T |
3198449 |
ccaattcatctcttggggactcaaaccccac |
3198479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 3322215 - 3322360
Alignment:
| Q |
53 |
gttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagctcattggttccctccaccaaacaacta |
149 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| |||||| | || |||||| || ||||| |||||||||||||| | ||||||| ||| |
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|
| T |
3322215 |
gttattaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctaccacagtaatcaacatccgctcattggttcccccaaccaaaccactt |
3322314 |
T |
|
| Q |
150 |
accaattcatctcttggtgactcaaatcccacaacttgagtctctt |
195 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||||||||| |
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| T |
3322315 |
accaattcatctgttggatcctcaaaccccacaacttgagtctctt |
3322360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 3357335 - 3357539
Alignment:
| Q |
27 |
caatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcct---ttaccaaccacaaaaacaaacatgagct |
123 |
Q |
| |
|
||||||||||| |||| || | |||||||||||| |||||||||| ||||||||||||||| |||||| | || | |||| |||| ||| | | | |
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|
| T |
3357335 |
caatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatgcctagcacagaaaccaacgtccgtt |
3357434 |
T |
|
| Q |
124 |
cattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcgaagatc |
223 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||| | |||| |||||||| || |||||||||||||||| |||||||| | |||||||||| | || |
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| T |
3357435 |
cattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaatgaaataaggagccattcgagggtc |
3357534 |
T |
|
| Q |
224 |
accaa |
228 |
Q |
| |
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||||| |
|
|
| T |
3357535 |
accaa |
3357539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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