View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_54 (Length: 326)
Name: NF6871A_low_54
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 42852146 - 42852450
Alignment:
| Q |
12 |
catcatcatcatcacttgtgtctgtctcattctcttgttgcacggtggctctttcatttgaatcatgtttaaatatttcaggcctatacatnnnnnnntg |
111 |
Q |
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| T |
42852146 |
catcatcatcatcacttgtgtctgtctcattctcttgttgcacggtggctctttcatttgaatcatgtttaaatatttcaggcctatacataaaaaaatg |
42852245 |
T |
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| Q |
112 |
attaaaaatatgagaatttgataacttgtggatgccactatatgctaccatataacatccaagtttgattgatatagaaaatataaacaaagcatgtgaa |
211 |
Q |
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| T |
42852246 |
attaaaaatatgagaatttgataacttgtggatgccactatatgctaccatataacatccaagtttgattgatatagagaatataaacaaagcatgtgaa |
42852345 |
T |
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| Q |
212 |
gtaaaactatctaaatatgcatcaacatacggctcaaaaggttgtatcttgtttgtattgtcttccattgcaggtagttcatcatcatccctgatgtcca |
311 |
Q |
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| T |
42852346 |
gtaaaaccatctaaatatgcatcaacatacggctcaaaaggttgtatcttgtttgtattgtcttccattgcaggtagttcatcatcatcccttatgtccg |
42852445 |
T |
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| Q |
312 |
tctca |
316 |
Q |
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||||| |
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| T |
42852446 |
tctca |
42852450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 42852424 - 42852630
Alignment:
| Q |
14 |
tcatcatcatcacttgtgtctgtctcattctcttgttgcacggtggctctttcatttgaatcatgtttaaatatttcaggcctatacatnnnnnnntgat |
113 |
Q |
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| T |
42852424 |
tcatcatcatcccttatgtccgtctcagtctcttgttgctcggtggctattacttttaaatcctgtttaaatatttcaggcctatacat-aaaacatgat |
42852522 |
T |
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| Q |
114 |
t--aaaaatatgagaatttgataacttgtggatgccactatatgctaccatataacatccaagtttgattgatatagaaaatataaacaaagcatgtgaa |
211 |
Q |
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| T |
42852523 |
taaaaaaatatgagaatttgatatgttgtggataccattatatgccaccatacaacatccaagtttgaatg--atagggaatatgaacaaagtatgggaa |
42852620 |
T |
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| Q |
212 |
gtaaaactat |
221 |
Q |
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| T |
42852621 |
gaaaaactat |
42852630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 42852092 - 42852155
Alignment:
| Q |
237 |
catacggctcaaaaggttgtatcttgtttgtattgtcttccattgcaggtagttcatcatcatc |
300 |
Q |
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| T |
42852092 |
catacagctcaaaaggttgtatcctgtttgtattggcttccagtggaggtagtccatcatcatc |
42852155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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