View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_55 (Length: 325)

Name: NF6871A_low_55
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_55
NF6871A_low_55
[»] chr2 (27 HSPs)
chr2 (1-325)||(39215561-39215885)
chr2 (1-322)||(39161771-39162095)
chr2 (1-322)||(39207099-39207423)
chr2 (3-136)||(39370039-39370172)
chr2 (16-263)||(39388986-39389236)
chr2 (1-116)||(39192439-39192554)
chr2 (1-116)||(39198119-39198234)
chr2 (161-322)||(39192272-39192436)
chr2 (161-322)||(39197952-39198116)
chr2 (161-263)||(39222932-39223037)
chr2 (1-136)||(39414761-39414896)
chr2 (194-322)||(39370254-39370385)
chr2 (3-112)||(39468270-39468379)
chr2 (2-115)||(39473409-39473522)
chr2 (1-85)||(39137811-39137895)
chr2 (1-116)||(39222814-39222929)
chr2 (3-112)||(39397852-39397961)
chr2 (190-322)||(39381280-39381412)
chr2 (1-116)||(39381510-39381625)
chr2 (40-115)||(39459220-39459295)
chr2 (1-115)||(39421832-39421946)
chr2 (190-235)||(39421688-39421733)
chr2 (190-227)||(39468448-39468485)
chr2 (1-96)||(39494461-39494556)
chr2 (269-322)||(39223101-39223154)
chr2 (1-49)||(39152513-39152561)
chr2 (183-227)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (3-112)||(16113230-16113339)
chr6 (190-227)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (1-85)||(19807761-19807845)
chr7 (191-287)||(19807963-19808059)
[»] chr5 (2 HSPs)
chr5 (190-323)||(33561135-33561272)
chr5 (195-235)||(17059602-17059642)
[»] chr8 (1 HSPs)
chr8 (206-321)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 39215561 - 39215885
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39215561 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 39215660  T
Q  101 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215661 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaa 39215760  T
Q  201 tgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215761 tgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaa 39215860  T
Q  301 tatttttaatcatgttaatgtttta 325  Q
    |||||||||||||||||||||||||    
T  39215861 tatttttaatcatgttaatgtttta 39215885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 39161771 - 39162095
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    |||| |||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39161771 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39161870  T
Q  101 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatat---tgaagaaacacaatcgggt 197  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||   ||| |||| | |||| |||    
T  39161871 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39161970  T
Q  198 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 297  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39161971 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39162070  T
Q  298 aaatatttttaatcatgttaatgtt 322  Q
    | |  |||||| |||||||||||||    
T  39162071 acacgtttttactcatgttaatgtt 39162095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 39207423 - 39207099
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    |||| |||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39207423 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39207324  T
Q  101 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatat---tgaagaaacacaatcgggt 197  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||   ||| |||| | |||| |||    
T  39207323 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39207224  T
Q  198 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 297  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39207223 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39207124  T
Q  298 aaatatttttaatcatgttaatgtt 322  Q
    | |  |||||| |||||||||||||    
T  39207123 acacgtttttactcatgttaatgtt 39207099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 39370039 - 39370172
Alignment:
Q  3 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggaggac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||| || | ||||||||||||||||||||| |||    
T  39370039 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttggaagac 39370138  T
Q  103 aagtcaaggatcctaagttaaagttgaaaaaatt 136  Q
    ||||||||| || | ||| |||| |||| |||||    
T  39370139 aagtcaagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 39389236 - 39388986
Alignment:
Q  16 gacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 115  Q
    |||| ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||| |||| |||||||| |||||||||| ||| |||||||| |||||    
T  39389236 gacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcc 39389137  T
Q  116 taagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattca 212  Q
    | ||| |||| |||| ||||| |||  || |   | | |||  | |||||||||||||||| ||||    |||| | |||| ||||||||||||||||||    
T  39389136 tgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattca 39389037  T
Q  213 tctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatga 263  Q
    || |||||||||||||| |||   |||||| ||||||||||||||||||||    
T  39389036 tccagtttattgaaagaatttttttacaactgttcctcttaatgatgatga 39388986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39192554 - 39192439
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    |||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| |||    
T  39192554 agaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagg 39192455  T
Q  101 acaagtcaaggatcct 116  Q
    || |||||||||||||    
T  39192454 actagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39198234 - 39198119
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    |||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| |||    
T  39198234 agaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagg 39198135  T
Q  101 acaagtcaaggatcct 116  Q
    || |||||||||||||    
T  39198134 actagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 322
Target Start/End: Complemental strand, 39192436 - 39192272
Alignment:
Q  161 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 257  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  258 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 322  Q
    |||||| | ||||||||||  ||||||| || || |||||||| |||||||||||||||||||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgtt 39192272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 322
Target Start/End: Complemental strand, 39198116 - 39197952
Alignment:
Q  161 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 257  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  258 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 322  Q
    |||||| | ||||||||||  ||||||| || || |||||||| |||||||||||||||||||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgtt 39197952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  161 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 257  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  258 tgatga 263  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 39414896 - 39414761
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    ||||||||||||||| ||| |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| ||||||| |||    
T  39414896 agaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttgaagg 39414797  T
Q  101 acaagtcaaggatcctaagttaaagttgaaaaaatt 136  Q
    |||||| ||||||||| ||| |||| || |||||||    
T  39414796 acaagttaaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 39370254 - 39370385
Alignment:
Q  194 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 290  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  291 tgtttaaaaatatttttaatcatgttaatgtt 322  Q
    | | |||||| ||| |||||||||||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgtt 39370385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 39468270 - 39468379
Alignment:
Q  3 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggaggac 102  Q
    ||||||||||| | |||||| |||||| |  ||| ||||||||||  |||||||||| |||| |||||| |||||||||||||||||||| ||| |||||    
T  39468270 aagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggac 39468369  T
Q  103 aagtcaagga 112  Q
    ||||||||||    
T  39468370 aagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 39473522 - 39473409
Alignment:
Q  2 gaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagga 101  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| ||||    
T  39473522 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaagga 39473423  T
Q  102 caagtcaaggatcc 115  Q
     ||||| |||||||    
T  39473422 gaagtcgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 39137811 - 39137895
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaaga 85  Q
    |||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137811 agaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39222814 - 39222929
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    ||||||||||||||| ||| |||||  ||||||||| | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  ||||| |||    
T  39222814 agaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaagg 39222913  T
Q  101 acaagtcaaggatcct 116  Q
    ||||||||||||||||    
T  39222914 acaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 39397961 - 39397852
Alignment:
Q  3 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggaggac 102  Q
    |||||| |||||| |||||||||| ||||||||| |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| ||| ||| |    
T  39397961 aagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtc 39397862  T
Q  103 aagtcaagga 112  Q
     |||||||||    
T  39397861 gagtcaagga 39397852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 39381412 - 39381280
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 289  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  290 ttgtttaaaaatatttttaatcatgttaatgtt 322  Q
    ||  |||||||||||||||||| ||||||||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgtt 39381280  T

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Target: chr2; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39381625 - 39381510
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    ||||| ||||||||| |||   ||||||||  || | |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | |    
T  39381625 agaagaaatttgaagaacgaatgaaagaacacgaatcaaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaag 39381526  T
Q  101 acaagtcaaggatcct 116  Q
    ||||| ||||||||||    
T  39381525 acaagacaaggatcct 39381510  T

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Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 39459220 - 39459295
Alignment:
Q  40 aagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 115  Q
    |||||||||||||||||||||  || || ||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  39459220 aagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 39421946 - 39421832
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggagg 100  Q
    ||||| ||||||||| ||  |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  |||||||     
T  39421946 agaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggagc 39421847  T
Q  101 acaagtcaaggatcc 115  Q
    || ||||||||||||    
T  39421846 actagtcaaggatcc 39421832  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 235  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaa 227  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39494556 - 39494461
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttg 96  Q
    |||| ||||||||||||||  ||||||| |  |||| |||||| || |||||||||| ||| || |||||| | |||  |||||||||||||||||    
T  39494556 agaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttg 39494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  269 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 322  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39152513 - 39152561
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataa 49  Q
    ||||||||||||||  |||||||||||| || |||| ||||||||||||    
T  39152513 agaagcaatttgaaaaacggtggaaagagctcgagtcaaaagagaataa 39152561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  183 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 227  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 16113230 - 16113339
Alignment:
Q  3 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaagagaagcagtttggaggac 102  Q
    ||||||||||||| ||||||||||||||| || | |||||||||| ||||||||||| |||  |||||| |||||||||||||||||||| ||| || ||    
T  16113230 aagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtac 16113329  T
Q  103 aagtcaagga 112  Q
    ||||||||||    
T  16113330 aagtcaagga 16113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaa 227  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19807761 - 19807845
Alignment:
Q  1 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagatcaagttaaaaga 85  Q
    |||| ||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807761 agaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  191 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 287  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 33561135 - 33561272
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 285  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  286 atagttgtttaaaaatatttttaatcatgttaatgttt 323  Q
     || |  |||||| | ||||||||||||||||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgttt 33561272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  195 ggtaaatgttcttattcatctagtttattgaaagagtttca 235  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  206 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 302  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  303 tttttaatcatgttaatgt 321  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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