View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_58 (Length: 317)

Name: NF6871A_low_58
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_58
NF6871A_low_58
[»] chr2 (2 HSPs)
chr2 (154-317)||(31658583-31658746)
chr2 (16-53)||(31658521-31658558)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 154 - 317
Target Start/End: Original strand, 31658583 - 31658746
Alignment:
Q  154 ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31658583 ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt 31658682  T
Q  254 caatcgatgatagcatagtggcatgtatcaaataatcaaaacaaaattcaaagttacatgatat 317  Q
    ||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||    
T  31658683 caatcgatgatagcatagtggcacgtctcaaataatcaaaataaacttcaaagttacatgatat 31658746  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 31658521 - 31658558
Alignment:
Q  16 gacatcataagttaaacgatcaaataaatctcccatta 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31658521 gacatcataagttaaacgatcaaataaatctcccatta 31658558  T

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