View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_63 (Length: 307)
Name: NF6871A_low_63
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 13609047 - 13608925
Alignment:
| Q |
5 |
atattgccaggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagagga |
104 |
Q |
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| T |
13609047 |
atattgccaggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagagga |
13608948 |
T |
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| Q |
105 |
tagaaattccaaatcatcacatg |
127 |
Q |
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| T |
13608947 |
tagaaattccaaatcatcacatg |
13608925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 13608867 - 13608750
Alignment:
| Q |
185 |
tcatgacagtaaacatcaaatataatgacaaagtgctactgtaattaattgaaaaattcagtcaaatccttgaaaattattcgttcaatgaaacaggtaa |
284 |
Q |
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| T |
13608867 |
tcatgacagtaaacatcaaatataatgacaaagtgctactgtaattaattgaaaaattcagtcaaatccttgaaaattattcgttcaatgaaacaggtaa |
13608768 |
T |
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| Q |
285 |
agttttgttagtaaactt |
302 |
Q |
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| T |
13608767 |
agttttgttagtaaactt |
13608750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 31244988 - 31244876
Alignment:
| Q |
13 |
aggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagaggatagaaatt |
112 |
Q |
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| T |
31244988 |
aggtaaagttgaagatttgtgactcaataagcatgttacctctttaataatttttccaatctctgcatattgtggcctaaaagaccagaggatagaaata |
31244889 |
T |
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| Q |
113 |
ccaaatcatcaca |
125 |
Q |
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| T |
31244888 |
ccaaatcatcaca |
31244876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 6472683 - 6472799
Alignment:
| Q |
11 |
ccaggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagaggatagaaa |
110 |
Q |
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|||| ||||||| ||| || ||||||||||||| | ||| |||||||||||||||| ||||||| ||||||| || |||| |||||||||| ||||||| |
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| T |
6472683 |
ccagttaaagtttcagtcttatttcccaataagcttcttacctttttaataattttttcaatctccgcatattgtgacctaaaagaccagagaatagaaa |
6472782 |
T |
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| Q |
111 |
ttccaaatcatcacatg |
127 |
Q |
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| T |
6472783 |
ttccaaatcatcacatg |
6472799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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