View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_64 (Length: 304)

Name: NF6871A_low_64
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_64
NF6871A_low_64
[»] chr3 (3 HSPs)
chr3 (4-298)||(15513433-15513727)
chr3 (35-77)||(15514277-15514319)
chr3 (200-285)||(12767337-12767422)
[»] chr5 (4 HSPs)
chr5 (228-298)||(9962954-9963024)
chr5 (227-298)||(18398599-18398670)
chr5 (204-298)||(31536419-31536513)
chr5 (200-285)||(36289589-36289674)
[»] chr2 (7 HSPs)
chr2 (200-298)||(12670743-12670841)
chr2 (201-285)||(10633364-10633448)
chr2 (183-298)||(30481661-30481776)
chr2 (244-299)||(34557292-34557347)
chr2 (244-298)||(33710553-33710607)
chr2 (200-269)||(4422823-4422892)
chr2 (200-256)||(21488865-21488921)
[»] chr8 (6 HSPs)
chr8 (227-280)||(9030583-9030636)
chr8 (242-298)||(37616265-37616321)
chr8 (197-298)||(8238727-8238828)
chr8 (244-285)||(10340283-10340324)
chr8 (227-283)||(10340211-10340267)
chr8 (229-257)||(36203407-36203435)
[»] chr7 (5 HSPs)
chr7 (202-257)||(11329505-11329560)
chr7 (184-279)||(25690712-25690807)
chr7 (200-298)||(16780773-16780871)
chr7 (227-298)||(41195668-41195739)
chr7 (227-295)||(30357895-30357963)
[»] chr4 (5 HSPs)
chr4 (183-298)||(40423307-40423422)
chr4 (244-291)||(43115575-43115622)
chr4 (249-298)||(53449054-53449103)
chr4 (199-257)||(25844267-25844325)
chr4 (227-275)||(40421951-40421999)
[»] chr1 (3 HSPs)
chr1 (245-298)||(39126966-39127019)
chr1 (244-298)||(25485009-25485063)
chr1 (222-298)||(34062624-34062700)
[»] scaffold0110 (1 HSPs)
scaffold0110 (242-298)||(31363-31419)
[»] chr6 (1 HSPs)
chr6 (244-298)||(33617713-33617767)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 15513727 - 15513433
Alignment:
Q  4 atgaagtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513727 atgaggtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 15513628  T
Q  104 gttctccttccttcgagaattactcatttccttaatttaatgtgatttaactcatgttcggcannnnnnnnnnnacaataagttaattcatgctagcact 203  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||           | ||||||||||||||||||||||||    
T  15513627 gttcttcttcctttgagaattactcatttccttaatttaatgtgatttaactcacgttcggcatttttttttttataataagttaattcatgctagcact 15513528  T
Q  204 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513527 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 15513433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 15514319 - 15514277
Alignment:
Q  35 catcaacctaggttgtgatacaaacataatagtagacccttac 77  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  15514319 catcaacctaggttgcgatacaaacataatagtagacccttac 15514277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 12767337 - 12767422
Alignment:
Q  200 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 285  Q
    ||||| ||||||||||| |   |||| |||||||||||||  | |||||||||||||  | ||||||||| ||| |||||||||||    
T  12767337 cacttctaagatcggttgatccgacttaaaaagtgattgaaacgatcttaaaagtgttagcgtgagttaactcaagttgaaaaatg 12767422  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 9962954 - 9963024
Alignment:
Q  228 aaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    |||||||||||| |||||||||||||||||  |||||||||| | ||| ||||||||| ||||||| ||||    
T  9962954 aaaagtgattgaatcaatcttaaaagtgtcattgtgagttaacttacgctgaaaaatgccgaacgtaagtt 9963024  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 18398599 - 18398670
Alignment:
Q  227 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||| |||  | |||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||    
T  18398599 aaaaagtgaatgaaccgatcttaaaagtgtcagtgtaagttaactcacgttgaaaaatatcgagcgtgagtt 18398670  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 298
Target Start/End: Original strand, 31536419 - 31536513
Alignment:
Q  204 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||| ||||||  |||| ||||| | |||||  | ||||||||| | || ||||||||||| || |||| |||||||| |||||||||||    
T  31536419 tttaagatcagttaaaccgacttaaaaaattattgaaccgatcttaaaaatatcagtgtgagttaactctcgttaaaaaatgttgaacgtgagtt 31536513  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 36289674 - 36289589
Alignment:
Q  200 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 285  Q
    ||||||||||||   ||||| ||||| ||||||||||| | || ||||||||||||||  |||||  ||| ||||| |||||||||    
T  36289674 cacttttaagattcattaaactgacttaaaaagtgattaaatcgatcttaaaagtgtcaatgtgaactaactcacgctgaaaaatg 36289589  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 12670841 - 12670743
Alignment:
Q  200 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||||||||||| |   | || ||||| |||||||  | |||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||    
T  12670841 cacttttaagatcggttgagtcggcttaaaaattgattgaaccgatcttaaaagtgtcagcgtgagttaagtcacgttgcaaaatgtcgaatgtgagtt 12670743  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 10633448 - 10633364
Alignment:
Q  201 acttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 285  Q
    |||||||||||||||| ||  |||| ||||| ||||||| |||||| | ||||  ||  |||||||||| |||||||||||||||    
T  10633448 acttttaagatcggttgaaacgacttaaaaattgattgaatcaatcctcaaaggatcactgtgagttaactcacgttgaaaaatg 10633364  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 298
Target Start/End: Complemental strand, 30481776 - 30481661
Alignment:
Q  183 aagttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 282  Q
    ||||||||| |  |||| ||||||||||| |||| || || || ||||| | |||||    |||||||||||| | ||||||||||| ||||| | ||||    
T  30481776 aagttaatttacactagaacttttaagataggttgaattggcttaaaaaattattgaactgatcttaaaagtgccagtgtgagttaactcacgctaaaaa 30481677  T
Q  283 atgtcgaacgtgagtt 298  Q
    ||||||||| ||||||    
T  30481676 atgtcgaacatgagtt 30481661  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 34557347 - 34557292
Alignment:
Q  244 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagttt 299  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||| || ||||||    
T  34557347 atcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgagcgagagttt 34557292  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 33710607 - 33710553
Alignment:
Q  244 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    |||||||||||||| | || |||||| ||||| ||||||||||||||||| ||||    
T  33710607 atcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgaacgtaagtt 33710553  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 4422823 - 4422892
Alignment:
Q  200 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaa 269  Q
    ||||||||||||||||| |   |||| |||||||||||||| | |||| ||||||| ||| |||||||||    
T  4422823 cacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtgacggcgtgagttaa 4422892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 21488921 - 21488865
Alignment:
Q  200 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgt 256  Q
    ||||||||||||||||| || ||||| ||||| |||||||  | |||||||||||||    
T  21488921 cacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgt 21488865  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 9030636 - 9030583
Alignment:
Q  227 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaa 280  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  9030636 aaaaagtgattgaatcgatcttaaaagtgtcggtgtgagttaactcacgctgaa 9030583  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 37616321 - 37616265
Alignment:
Q  242 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    |||||||||||||||| | |||||||||  |||| ||||||||||||||||||||||    
T  37616321 caatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcgaacgtgagtt 37616265  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 8238828 - 8238727
Alignment:
Q  197 tagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgag 296  Q
    |||||||||||||||||||| |   ||||||||||||||||||    |||| ||||||||| | ||||||||| |  || |||||||| |||| ||||||    
T  8238828 tagcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaactaccgctgaaaaatatcgagcgtgag 8238729  T
Q  297 tt 298  Q
    ||    
T  8238728 tt 8238727  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 10340283 - 10340324
Alignment:
Q  244 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 285  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
T  10340283 atcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 10340267 - 10340211
Alignment:
Q  227 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaa 283  Q
    ||||| ||||||| || |||| ||||||||| ||||||||||| ||||| |||||||    
T  10340267 aaaaaatgattgaatcgatctaaaaagtgtcagtgtgagttaactcacgctgaaaaa 10340211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 36203407 - 36203435
Alignment:
Q  229 aaagtgattgagtcaatcttaaaagtgtc 257  Q
    |||||||||||||||||||||||||||||    
T  36203407 aaagtgattgagtcaatcttaaaagtgtc 36203435  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 11329560 - 11329505
Alignment:
Q  202 cttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 257  Q
    ||||||||||||||||||  |||| |||||||||| || |||||||||||||||||    
T  11329560 cttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagtgtc 11329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 25690807 - 25690712
Alignment:
Q  184 agttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttga 279  Q
    ||||||||||||||  ||||||||||||||||| ||  | || |||||||||||||  | |||| ||||||||| | ||||||||| ||| |||||    
T  25690807 agttaattcatgctgacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaactcatgttga 25690712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 16780773 - 16780871
Alignment:
Q  200 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||||||||||| ||  |||| |||||||||||||  | |||||||||||| | | || |||||| ||| | ||||||||||||| | ||||||    
T  16780773 cacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaatgtcgagcatgagtt 16780871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 41195739 - 41195668
Alignment:
Q  227 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||||||| |||| |||||||||||| | ||||||||| | ||| | ||||||| ||| ||||||||    
T  41195739 aaaaagtgattgaatcaaccttaaaagtgtcagcgtgagttaactaacgctaaaaaatgccgagcgtgagtt 41195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 30357895 - 30357963
Alignment:
Q  227 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtga 295  Q
    ||||||||| ||| ||||||| |||||||||||||||| |||  |  || ||||||||| |||||||||    
T  30357895 aaaaagtgagtgaatcaatctaaaaagtgtcggtgtgaattagctaccgatgaaaaatgccgaacgtga 30357963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 298
Target Start/End: Original strand, 40423307 - 40423422
Alignment:
Q  183 aagttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 282  Q
    ||||||| |||||||  ||||||||||||  ||| ||  |||| |||||||||||||  | ||||||||| |||| | ||||||||||||||| | ||||    
T  40423307 aagttaactcatgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcagcgtgagttaattcacgcttaaaa 40423406  T
Q  283 atgtcgaacgtgagtt 298  Q
    |||  || ||||||||    
T  40423407 atgctgagcgtgagtt 40423422  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 43115622 - 43115575
Alignment:
Q  244 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaac 291  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  43115622 atcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcgaac 43115575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 53449103 - 53449054
Alignment:
Q  249 aaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| |||||||    
T  53449103 aaaagtgtcggcgtgagttaactcacattgaaaaatgtcgaatgtgagtt 53449054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 25844267 - 25844325
Alignment:
Q  199 gcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 257  Q
    |||||||||||||||||| ||  | || |||||| |||||| |||||||||||||||||    
T  25844267 gcacttttaagatcggttgaaccggcttaaaaagcgattgaatcaatcttaaaagtgtc 25844325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 40421951 - 40421999
Alignment:
Q  227 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacg 275  Q
    |||||||||||||   ||||||||||||||| ||||||||||| |||||    
T  40421951 aaaaagtgattgaactaatcttaaaagtgtcagtgtgagttaactcacg 40421999  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 39126966 - 39127019
Alignment:
Q  245 tcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||    
T  39126966 tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgagcgtgagtt 39127019  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 25485009 - 25485063
Alignment:
Q  244 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    |||||||||||| | | ||||||||| ||||| || |||||||||||||||||||    
T  25485009 atcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagtt 25485063  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 34062700 - 34062624
Alignment:
Q  222 gactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    |||| |||||||||||||  | || ||||||||||| | ||||||| | ||||| |||||||||| || ||||||||    
T  34062700 gacttaaaaagtgattgaaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagtt 34062624  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 31419 - 31363
Alignment:
Q  242 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||||| |||  ||||||||||| ||||| ||||||||| ||||||||||||    
T  31419 caatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtgagtt 31363  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 33617713 - 33617767
Alignment:
Q  244 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 298  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||  |||||||    
T  33617713 atcttaaaagtatcgctatcagttaattcacgttgaaaaatgtcgagtgtgagtt 33617767  T

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