View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_75 (Length: 295)
Name: NF6871A_low_75
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_75 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 37821240 - 37821505
Alignment:
| Q |
14 |
gaaatgataggagaccaatgacaccaaaaatttaaaactttgtagagtggttagtggaatgcccactaagtggacttttatatacgagtactacggaaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821240 |
gaaatgataggagaccaatgacaccaaaaatttaaaactttgtagagtggttagtggaatggccactaagtggacttttatatacgagtactacggaaga |
37821339 |
T |
|
| Q |
114 |
aattgtgaggccagcagtcacatcacattaccatgagttttggaattgctcttaacatatatcattaataaaatgctatagttatgta------------ |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
37821340 |
aattgtgaggccagcagtcacatcacattaccatgagttttggaattgctcttaac--atatcattattaaaatgctatagttatgtatgataaagggtg |
37821437 |
T |
|
| Q |
202 |
tgataattatatatgtaagagatgaatagtattacggtatcaaccgttaaaaaacattacattatcaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37821438 |
tgataattatatatgtaagagatgaatagtattacagtatcaaccgttaaaaaacattacattatcaa |
37821505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University