View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_8 (Length: 428)
Name: NF6871A_low_8
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 46008979 - 46008566
Alignment:
| Q |
1 |
tgatgatgatttctgaggaggctggtttctttttatccgttggctcaaattcccatgtgctgttttcttgcatttttggaaagattttttgtcctccttc |
100 |
Q |
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||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46008979 |
tgatgatgatttctgaggaggcttgtttctgtttatccgtggactcaaattcccatgtgctgttttcttgcattttgggaaagattttttgtcctccttc |
46008880 |
T |
|
| Q |
101 |
tctgacattgcttgtgtttgtggctttgttgaaacttttggaagttgtgcttctatgttgactgcaggtggtggtgatgattgttttagtacttgatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008879 |
tctgacattgcttgtgtttgtggctttgttgaaactcttgaaacttgtgcttcaatgttgactgcaggtggtggtgatgattgttttagtacttgatgtg |
46008780 |
T |
|
| Q |
201 |
tattttggtctcttggagtagttgttggtgaatgtttatggttgttatcattgaatctgctgagtcttggggaatgagatgtgtttgttgagggtacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008779 |
tattttggtctcttggagtagttgttggtgaatgtttatggttgttatcattgaatctgctgagtcttggggaatgagatgtgtttgttgagggtacttt |
46008680 |
T |
|
| Q |
301 |
tccttggtttgattcatctaatggtttaagagctttcttgaatttgatttgagcaacaaaatcttctttcgctttttcttgttctctgtttttcactgtg |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46008679 |
tccttgatttgattcatctaatggtttaagagctttcttgaatttgatttgagcaacaaaatcttctttcactttttcttgttctctgtttttcactgtg |
46008580 |
T |
|
| Q |
401 |
ttggtgatgtccat |
414 |
Q |
| |
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|||||||||||||| |
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| T |
46008579 |
ttggtgatgtccat |
46008566 |
T |
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