View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_82 (Length: 291)

Name: NF6871A_low_82
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_82
NF6871A_low_82
[»] chr7 (1 HSPs)
chr7 (13-291)||(30874520-30874800)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 30874800 - 30874520
Alignment:
Q  13 atatagacacaacaatttaacttcatcccatgattttaaaagtctacaattaactataattaatgtggttttcaaagagattaataaataaata--aact 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||    
T  30874800 atatagacacaacaatttaacttcatcccatgattttaaaagtctacaattaactataattaatgtagttttcaaagagattaataaataaatataaact 30874701  T
Q  111 tacattgtttaatcccaccatgaatattttattgttatgaatactttcctagttgtgagaatggtcgcaagttccaccactttatttgtttctctgtctc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30874700 tacattgtttaatcccaccatgaatattttattgttatgaatactttcctagttgtgagaatggtcgcaagttccaccactttatttgtttctctgtctc 30874601  T
Q  211 tctctttccccttccaatctcatcctattccgttttctctgcagtactcaattgatccatttgtttttctattcgttttga 291  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30874600 tctcttttcccttccaatctcatcctattccgttttctctgcagtactcaattgatccatttgtttttctattcgttttga 30874520  T

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