View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_86 (Length: 284)
Name: NF6871A_low_86
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_86 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 45 - 284
Target Start/End: Complemental strand, 40586365 - 40586120
Alignment:
| Q |
45 |
ctccctcttgaatgaatcttttactatatttcttccttttccaggagttgaaaaaatgaatggaagtgctttgttctgtttgtagaatttggcacagaaa |
144 |
Q |
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| T |
40586365 |
ctccctcttgaatgaatcttttactatatttcttccttttccaggagttgaaaaaatggatggaagtgctttgttctgtttgtagaatttggcacagaaa |
40586266 |
T |
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| Q |
145 |
aataatacttttgacttagttattttataatgccagttccacttgctccttatccaactccacctccagctcctgctccagc------tccatatacaac |
238 |
Q |
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| T |
40586265 |
aataatacttttgacttagttcttttataatgccagttccacttgctccttatccaactccacctccagctcctgctccagctccagctccatatacaac |
40586166 |
T |
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| Q |
239 |
acctccaacaaatggtatcttaacctttctttttctctgtgcttga |
284 |
Q |
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| T |
40586165 |
acctccaacaaatggtatcttaacctttctttttctctgtgcttga |
40586120 |
T |
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