View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_9 (Length: 428)
Name: NF6871A_low_9
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Complemental strand, 50442336 - 50441930
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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| T |
50442336 |
gattgaatatgcttcgcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
50442237 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttttgtaccgtccatccattctgataattaacatgaaaaataatcgatatgtaactttagattgcactg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50442236 |
acattttacaaattttacttctagcttctagttttgtaccgtccatccattctgataattaacatgaaaaataatcaatatgtaactttagattgcactg |
50442137 |
T |
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| Q |
207 |
tttcaactttatgtctccaaacattaataaaagtttaaatttctagcttggttaagagatttgtatctgtatgtattcaatttcttaaggaa-----nnn |
301 |
Q |
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| T |
50442136 |
tttcaactttatatcgccaaacattaataaaagtttaaatttctagcttggttaagagatttttatcagtatgtattcaatttcttaaggaatttttttt |
50442037 |
T |
|
| Q |
302 |
nnnnnncatatcagaagattcaaggtatcaaatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaaga |
401 |
Q |
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| T |
50442036 |
ttttttcatatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaaga |
50441937 |
T |
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| Q |
402 |
ttcaatc |
408 |
Q |
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| T |
50441936 |
ttcaatc |
50441930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 50447237 - 50447104
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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| T |
50447237 |
gattgaatatgcttctcaagtaggaattgagcatctgattcttggctcttcagcaaaaactagtttgcacaagtatgcatccattttcctaagtagcatc |
50447138 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttt |
140 |
Q |
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| T |
50447137 |
acattttgcaaattttacttctagcttatagttt |
50447104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 408
Target Start/End: Complemental strand, 50447019 - 50446921
Alignment:
| Q |
310 |
tatcagaagattcaaggtatcaaatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatc |
408 |
Q |
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| T |
50447019 |
tatcagaatattcaaggcaacagatatttctggaacggtgtcaaaaggggcaccagatttctgtacagtctatgtcattggcaatggaaagattcaatc |
50446921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 311 - 408
Target Start/End: Complemental strand, 50421876 - 50421779
Alignment:
| Q |
311 |
atcagaagattcaaggtatcaaatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatc |
408 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
50421876 |
atcagaagattcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatc |
50421779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 50422104 - 50421965
Alignment:
| Q |
7 |
gattgaatatgcttctcaggcaggaattgagcatctgattcttggctcttcaacaaaaactagtttgctcaagtatacatccatttctctaagtaacatc |
106 |
Q |
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|||||||||||| |||| | | |||||||||||| || |||||||||| ||||||| | ||| |||||| ||||| |||| |||| | |||||| ||| |
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| T |
50422104 |
gattgaatatgcctctcggacgggaattgagcatttggttcttggctcctcaacaagagctaatttgcttgagtatgcatctatttttataagtagcata |
50422005 |
T |
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| Q |
107 |
acattttacaaattttacttctagcttctagttttgtacc |
146 |
Q |
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||| || |||| ||||||| |||||||||||||| |||| |
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| T |
50422004 |
gcatgttgcaaagtttacttttagcttctagttttctacc |
50421965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 408
Target Start/End: Original strand, 1271152 - 1271250
Alignment:
| Q |
310 |
tatcagaagattcaaggtatcaaatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatc |
408 |
Q |
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||||||||| |||||||| | ||||||| | |||| | ||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||| |
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| T |
1271152 |
tatcagaaggttcaaggtggtagatattccagcaacaatatcaaaaggggcaccagatttttgtacagtatatgttgttggtaaaggaaaaattcaatc |
1271250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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