View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_92 (Length: 271)
Name: NF6871A_low_92
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_92 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 41963179 - 41963442
Alignment:
| Q |
11 |
cacagatggggggaggacctaaactaagctaaattgagtaacttacttcaaataaactcaaagtctccgaataacttttttattattgctattttgaccc |
110 |
Q |
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| T |
41963179 |
cacagatggggggaggacctaaactaagctaaattgagtaacttacttcaaataaactcaaagtctccgaataacttttttattattgctattttgaccc |
41963278 |
T |
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| Q |
111 |
gtaaacaataccttaaagattgatcaattccaggttcttcagaagtagataattgtctgctctgaga---------agattctatacttgaagttggaat |
201 |
Q |
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| T |
41963279 |
gtaaacaataccttaaagattgatcaattccaggttcttcggaagtagataattgtctgctctgagaagattctatagattctatacttgaagttggaat |
41963378 |
T |
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| Q |
202 |
ttgaaagtgatcagggatgatttttaatttttgaggacaatcatccatgaaattaaacttcttt |
265 |
Q |
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| T |
41963379 |
ttgaaagtgatcagggatgatttttaatttttgaggacaatcatccatgaaattaaacttcttt |
41963442 |
T |
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