View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_93 (Length: 270)
Name: NF6871A_low_93
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_93 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 42154006 - 42153767
Alignment:
| Q |
22 |
aatttgatctaagcaaaatataattttcaatactttgtttcgttaattactttttagaagtcttgaacgcacaatccagctcctcaaacacgatttcatg |
121 |
Q |
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| T |
42154006 |
aatttgatctaagcaaaatataatttttaatactttgtttcgttaattactttttagaagtcttgaacgcacaatccagctcctcaaacacgatttcatg |
42153907 |
T |
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| Q |
122 |
atgtttgggtgtccttcatctcgccactacgatcatacatttctttttcataattgatcatatgttactatgacaccacatttctattcaaaatttctat |
221 |
Q |
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| T |
42153906 |
atgtttgggtgtccttcatctcgccactgcgatcatacgtttctttttcataattgatcatatgttactatgacaccacatttctattcaaaatttcaat |
42153807 |
T |
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| Q |
222 |
gatttggatcttctcccacaaaaattttctacatattctt |
261 |
Q |
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| T |
42153806 |
gatttggatcttctcccacaaaaattttctacatcttctt |
42153767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 42293977 - 42294044
Alignment:
| Q |
22 |
aatttgatctaagcaaaatataattttcaatactttgtttcgttaattactttttagaagtcttgaacg |
90 |
Q |
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||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||| |||||| ||||||| |
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| T |
42293977 |
aatttgatccaagcaaaatttaattttctttactt-gtttcattaattacttttcagaagtgttgaacg |
42294044 |
T |
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