View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_95 (Length: 267)
Name: NF6871A_low_95
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_95 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 5381514 - 5381248
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5381514 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
5381415 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5381414 |
aaaatgtggtgtcgaactacatggtagagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
5381315 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtgt |
267 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5381314 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcagaagtatcaagatcaagtttggtgt |
5381248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 13721281 - 13721016
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
13721281 |
tcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactactggaaaggtttgtgatgttataatagacagtggtagttgtg |
13721182 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13721181 |
aaaatgtggtgtcgaactacatggtagagaagttagagatgccagcacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
13721082 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtg |
266 |
Q |
| |
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|| |||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13721081 |
gatggttacgaagtgtttccttgtgagtttttccattggtcagaagtatcaagatcaagtttggtg |
13721016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24341656 - 24341603
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcacc |
54 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
24341656 |
tcagcacaagaagagcattacttgaggaaaaacatttttcatactcgttgcacc |
24341603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 27696 - 27430
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27696 |
tcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttgtg |
27597 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27596 |
aaaatgtggtgtcgaactacatggtagagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
27497 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtgt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27496 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcagaagtatcaagatcaagtttggtgt |
27430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 88393 - 88659
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
88393 |
tcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttgtg |
88492 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
88493 |
aaaatgtggtgtcgaactacatggtagagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
88592 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtgt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
88593 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcagaagtatcaagatcaagtttggtgt |
88659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 11713247 - 11713513
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11713247 |
tcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttgtg |
11713346 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11713347 |
aaaatgtggtgtcgaactacatggtagagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
11713446 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtgt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11713447 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcagaagtatcaagatcaagtttggtgt |
11713513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13162456 - 13162722
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13162456 |
tcagcccaagaagagcattggttgacgaaaaacatcatccatactcgttgcaccactgctggaaaagtttgtgatattataatagatagtggtagttgtg |
13162555 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13162556 |
aaaatgtggtgtcgaactacatggtagagaagttagagatgccaacacaaagtcatcttcatccttacaaactacaatggctcaacaaagttagtgaagt |
13162655 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtgt |
267 |
Q |
| |
|
||||||||| || | ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13162656 |
gaaggttacaaatcattgccttgtgaatttttccattggtcagaagtatcaagatcaagtttggtgt |
13162722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 16775938 - 16775672
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16775938 |
tcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttttg |
16775839 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16775838 |
aaaatgtggtgtcgaactacatggtagagaagttacagatgccaacagaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
16775739 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtgt |
267 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16775738 |
gaaggttacgaagcgttgccttatgagtttttccattggtcagaagtatcaagatcaagtttggtgt |
16775672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 14475044 - 14474778
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14475044 |
tcagctcaagaagagcattggttgagcaaaaacatttttcatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttgtg |
14474945 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14474944 |
aaaatgtggtgtcgaactacatggtagagaatttagagatgccagcacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
14474845 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtgt |
267 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14474844 |
gaaggttacgaagtgttgccttgtgagtttttccattggtcagaagtatcaagatcaagtttggtgt |
14474778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 2795294 - 2795028
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2795294 |
tcagctcaagaagaacatttgttgaggaaaaacattttccatactcgttgcaccactgccggaaaagtttgtgatgttataatagacagtggtagttgtg |
2795195 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagagatgccaacacaaagtcatcctcatccttacaaactacaatggctcaacaaaggtagtgaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2795194 |
aaaatgtggtgtcgaactacatggtggagaagttagagatgccagcacaaagtcatcatcatccttacatactacaatggctcaacaaaggtagtgaagt |
2795095 |
T |
|
| Q |
201 |
gaaggttacgaagcgttgccttgtgagtttttccattggtcaaaagtatcaagatcaagtttggtgt |
267 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
2795094 |
gaaggttacgaagcgttgtcttgtgagtttttccattggtcagaagtatcaagatcaaatttggtgt |
2795028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 42377265 - 42377403
Alignment:
| Q |
1 |
tcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42377265 |
tcagctcaagaagagtattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttgtg |
42377364 |
T |
|
| Q |
101 |
aaaatgtggtgtcgaactacatggtaaagaagttagaga |
139 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42377365 |
aaaatgtggtgtcgaactacatggtagagaagttagaga |
42377403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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