View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_97 (Length: 266)
Name: NF6871A_low_97
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 35407159 - 35406960
Alignment:
| Q |
13 |
attctcgaaggctgatcagcttgcctaaccatttaggcagtgtttcaatatccaatccatgcatccattgagtnnnnnnncttgcacataagtattctaa |
112 |
Q |
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| T |
35407159 |
attctcaaaggctgatcagcttgcctaaccatttaggcagtgtttcaatatccaatccatgcatccattgagtaaacaaacttccacataagtattctaa |
35407060 |
T |
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| Q |
113 |
tttagcaattgatcaattaagtagagtctcaaacagagaatttcttaaatctaaaacttgcatgtatttaaaagagtttcactatcaagactcactcctt |
212 |
Q |
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| T |
35407059 |
tttagcaattgatcaattaagtagagtctcaaacatagaatttcttaaatctaaaacttgcatgtatttaaaaaagtttcactatcaagactcactcctt |
35406960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 35406935 - 35406880
Alignment:
| Q |
205 |
cactccttgacttggggaacaaagaatggcaaattgaaacattttcaacaattgat |
260 |
Q |
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| T |
35406935 |
cactccttgacttggggaacaaagaatgggaaattgaaacattttcaacaattgat |
35406880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 18117202 - 18117257
Alignment:
| Q |
205 |
cactccttgacttggggaacaaagaatggcaaattgaaacattttcaacaattgat |
260 |
Q |
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| T |
18117202 |
cactccttgacttggggaacaaagaatcgcaaattgaaacattttcaacaattgat |
18117257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 18132940 - 18132985
Alignment:
| Q |
15 |
tctcgaaggctgatcagcttgcctaaccatttaggcagtgtttcaa |
60 |
Q |
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| T |
18132940 |
tctcgaaggctgatcagcttgcctaaccctttaggcagtgtttcaa |
18132985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 18116902 - 18116943
Alignment:
| Q |
19 |
gaaggctgatcagcttgcctaaccatttaggcagtgtttcaa |
60 |
Q |
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| T |
18116902 |
gaaggctgatcagcttgcctaaccctttaggcaatgtttcaa |
18116943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 18124860 - 18124910
Alignment:
| Q |
210 |
cttgacttggggaacaaagaatggcaaattgaaacattttcaacaattgat |
260 |
Q |
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| T |
18124860 |
cttgacttggggaataaagtatggccaagtgaatcattttcaacaattgat |
18124910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 18117053 - 18117124
Alignment:
| Q |
107 |
ttctaatttagcaattgatcaattaagtagagtctcaaacagagaatttcttaaatctaaaacttgcatgtattt |
181 |
Q |
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| T |
18117053 |
ttctaatgtagcaattga---attaggtagagtctcgatcgaagaatttcttaaatctaaaactcgcaagtattt |
18117124 |
T |
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