View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_99 (Length: 264)

Name: NF6871A_low_99
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_99
NF6871A_low_99
[»] scaffold0128 (2 HSPs)
scaffold0128 (110-235)||(18554-18679)
scaffold0128 (1-109)||(18871-18978)
[»] chr8 (4 HSPs)
chr8 (145-232)||(13580396-13580485)
chr8 (180-232)||(28376659-28376711)
chr8 (147-232)||(26835636-26835721)
chr8 (160-224)||(22930331-22930395)
[»] chr1 (3 HSPs)
chr1 (147-232)||(8246762-8246847)
chr1 (147-232)||(1240429-1240514)
chr1 (178-232)||(3265538-3265592)
[»] chr6 (3 HSPs)
chr6 (147-232)||(12174322-12174407)
chr6 (183-232)||(10668956-10669005)
chr6 (180-232)||(9815747-9815799)
[»] chr5 (1 HSPs)
chr5 (147-232)||(16570538-16570623)
[»] chr4 (4 HSPs)
chr4 (179-232)||(47059692-47059745)
chr4 (179-232)||(47082057-47082110)
chr4 (178-232)||(12167052-12167106)
chr4 (163-232)||(36071615-36071684)
[»] chr2 (2 HSPs)
chr2 (147-232)||(40876967-40877052)
chr2 (180-232)||(5163794-5163846)
[»] chr7 (3 HSPs)
chr7 (160-232)||(3940706-3940778)
chr7 (160-232)||(9429391-9429463)
chr7 (180-232)||(35812616-35812668)
[»] chr3 (1 HSPs)
chr3 (160-232)||(15670920-15670992)


Alignment Details
Target: scaffold0128 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 18679 - 18554
Alignment:
Q  110 attatttcattatccacataattaataacttaacattaaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  18679 attatttcattatccacataattaataacttaacattaaatatttattttatagaattattcaaagcaagttaaaaagaaatacatgtatataccactaa 18580  T
Q  210 ctaataagtaaaaatattaatttcag 235  Q
    ||||||||||||||||||||||||||    
T  18579 ctaataagtaaaaatattaatttcag 18554  T

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Target: scaffold0128; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18978 - 18871
Alignment:
Q  1 tgcaatcatttgttatggagcttaatctctgtcaggaccgtttttgctactcagttcaattccctccttctttgtatcatcaattcttggctttgcaggt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18978 tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgatactcagttcaattccctccttctttg-atcatcaattcttggctttgcaggt 18880  T
Q  101 ttggttacc 109  Q
    |||||||||    
T  18879 ttggttacc 18871  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 13580396 - 13580485
Alignment:
Q  145 ttaaatatatatttt--atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||| |||||||||  ||||||||| ||| ||| | ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  13580396 ttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattt 13580485  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 28376711 - 28376659
Alignment:
Q  180 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  28376711 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 28376659  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 26835636 - 26835721
Alignment:
Q  147 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||||| ||  ||||||||| | | || || ||||||||||||| || |||||  ||||||||| |||||||||||| ||||||    
T  26835636 aaatatattttcaatagaattaataaaagaaaattaaaaagaaatatatttatattgtactaactattaagtaaaaataataattt 26835721  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 22930395 - 22930331
Alignment:
Q  160 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaat 224  Q
    ||||||||| ||| ||| | ||||||||| ||| || |||||| ||||||||| |||||||||||    
T  22930395 atagaattaatcaaagcgaattaaaaagatatatatctatatagtactaactattaagtaaaaat 22930331  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 8246762 - 8246847
Alignment:
Q  147 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||||| ||  ||||||||| ||| | ||| ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  8246762 aaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataattt 8246847  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 1240514 - 1240429
Alignment:
Q  147 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||||| ||  ||||||||| ||| |||   ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  1240514 aaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaataataattt 1240429  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 3265538 - 3265592
Alignment:
Q  178 agttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||||||||| || ||| || ||||||||| |||||||||||| ||||||    
T  3265538 agttaaaaagaaatatatctatttaatactaactattaagtaaaaataataattt 3265592  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 12174407 - 12174322
Alignment:
Q  147 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||||| ||| ||| ||||| ||| | | | ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  12174407 aaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 12174322  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 10668956 - 10669005
Alignment:
Q  183 aaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||| ||| || |||||| |||||||||||||||||||||| ||||||    
T  10668956 aaaagatatatatctatataatactaactaataagtaaaaataataattt 10669005  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 9815747 - 9815799
Alignment:
Q  180 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||||||| || |||||| || |||||| |||||||||||| ||||||    
T  9815747 ttaaaaagaaatatatctatatagtattaactactaagtaaaaataataattt 9815799  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 16570538 - 16570623
Alignment:
Q  147 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||||| ||| ||||||||| ||| ||  | ||||||||||||| || |||||  ||| |||||||||||||||||| ||||||    
T  16570538 aaatatatttttaatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattt 16570623  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 47059745 - 47059692
Alignment:
Q  179 gttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||||||||||| || | |||| |||||||||||||||||||||| ||||||    
T  47059745 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47059692  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 47082057 - 47082110
Alignment:
Q  179 gttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||||||||||| || | |||| |||||||||||||||||||||| ||||||    
T  47082057 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47082110  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 12167106 - 12167052
Alignment:
Q  178 agttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||| |||||||| ||||||||||||| || |||| ||||||| ||||||    
T  12167106 agttaaaaataaatacatatatatactactaattactaagcaaaaataataattt 12167052  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 36071615 - 36071684
Alignment:
Q  163 gaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||| ||| || || ||||||||||||| || |||||| |||||||||  ||||||||||| ||||||    
T  36071615 gaattaatcaaagaaaattaaaaagaaatatatctatatagtactaactatcaagtaaaaataataattt 36071684  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 40876967 - 40877052
Alignment:
Q  147 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    |||||||| ||  ||||||||| ||  | ||||||||||||||||| || |||||| |||||||||  ||||||||||| ||||||    
T  40876967 aaatatattttcaatagaattaatccaaacaagttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattt 40877052  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 5163846 - 5163794
Alignment:
Q  180 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||| ||| || |||||| ||||||||| |||||||||||| ||||||    
T  5163846 ttaaaaagatatatatttatatagtactaactactaagtaaaaataataattt 5163794  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 3940706 - 3940778
Alignment:
Q  160 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||| ||| || || ||||||||||||| || |||||  |||| |||| |||||||||||| ||||||    
T  3940706 atagaattaatcaaagtaaattaaaaagaaatatatctatattatacttactactaagtaaaaataataattt 3940778  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 9429391 - 9429463
Alignment:
Q  160 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||| ||| | | || |||||||||||| || |||||| ||||||||| ||| |||||||| ||||||    
T  9429391 atagaattaatcaaaacgagataaaaagaaatatatttatataatactaactattaaataaaaatactaattt 9429463  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 35812668 - 35812616
Alignment:
Q  180 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||||||| || |||||| |||||| || |||||||||||| ||||||    
T  35812668 ttaaaaagaaatatatctatatagtactaattattaagtaaaaataataattt 35812616  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 15670992 - 15670920
Alignment:
Q  160 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 232  Q
    ||||||||| ||| | ||| ||||||||||||| || |||||  || |||||| |||||||||||| ||||||    
T  15670992 atagaattaatcaaaacaaattaaaaagaaatatatctatattgtaataactactaagtaaaaataataattt 15670920  T

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