View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_high_17 (Length: 275)
Name: NF6872A_high_17
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_high_17 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0182 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 28628 - 28397
Alignment:
| Q |
22 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28628 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagag |
28529 |
T |
|
| Q |
122 |
cggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacatat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28528 |
cggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacatat |
28443 |
T |
|
| Q |
222 |
tattatttaacatgatttctgattgttgtgatttttgttctatgat |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28442 |
tattatttaacatgatttctgattgttgtgatttttgttctgtgat |
28397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 275738 - 275507
Alignment:
| Q |
22 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275738 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagag |
275639 |
T |
|
| Q |
122 |
cggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacatat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
275638 |
cggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacatat |
275553 |
T |
|
| Q |
222 |
tattatttaacatgatttctgattgttgtgatttttgttctatgat |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
275552 |
tattatttaacatgatttctgattgttgtgatttttgttctgtgat |
275507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 26396343 - 26396111
Alignment:
| Q |
22 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaa-gaataaaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26396343 |
aaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaaagaataaaga |
26396244 |
T |
|
| Q |
121 |
gcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26396243 |
gcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacata |
26396158 |
T |
|
| Q |
221 |
ttattatttaacatgatttctgattgttgtgatttttgttctatgat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26396157 |
ttattatttaacatgatttctgattgttgtgatttttgttctgtgat |
26396111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 26460346 - 26460430
Alignment:
| Q |
63 |
aagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaa |
147 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||||| || ||||||||||| ||||| || ||||| |||||||| ||||||| |
|
|
| T |
26460346 |
aagaaattacttgatcctaaaccagcaaacacaaaaggagctccgaaaagaatcaagagtgggattgagagaggtcgtaagagaa |
26460430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University